Browse Element(s) Details


Os.51728.1.S1_at

Description gb:AK063554.1
DB_XREF= gi:32973572
TID=Os.51728.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E06, full insert sequence.
FL= gb:AK063554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3033011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51728.1.S1_at--1087--6091Chr09:18466799..18466823 (25 bp)
GAGTGTCTACTGCTACAATCGTTTG
LOC_Os09g30330
Os.51728.1.S1_at--835--6071Chr09:18467462..18467484 (23 bp)
GAGTATTGCATATGACCCTGGTCAA
LOC_Os09g30330
Os.51728.1.S1_at--921--2431Chr09:18467654..18467678 (25 bp)
AAAAGACTGCTCTTGTCTGGCTGGC
LOC_Os09g30330
Os.51728.1.S1_at--936--4731Chr09:18467702..18467726 (25 bp)
GCTGTAGCCTGAAAACCTTCTGCAA
LOC_Os09g30330
Os.51728.1.S1_at--219--7291Chr09:18467727..18467751 (25 bp)
GTGCCATTTTTGACTCGGAGATCTT
LOC_Os09g30330
Os.51728.1.S1_at--14--1291Chr09:18467745..18467769 (25 bp)
AGATCTTCAGCCCTGTGCAGAGGAA
LOC_Os09g30330
Os.51728.1.S1_at--545--6191Chr09:18467764..18467788 (25 bp)
GAGGAAAGATCATCGCTCGCTCAGC
LOC_Os09g30330
Os.51728.1.S1_at--896--9051Chr09:18467805..18467829 (25 bp)
TGCATCGCAGCTTGTGAATCCGTTT
LOC_Os09g30330
Os.51728.1.S1_at--130--5251Chr09:18467820..18467844 (25 bp)
GAATCCGTTTTGGTAGCTGTTAATC
LOC_Os09g30330
Os.51728.1.S1_at--156--1111Chr09:18467895..18467919 (25 bp)
AGTGATGCATCTGTCAGCTGCTGTA
LOC_Os09g30330
Os.51728.1.S1_at--572--2311Chr09:18467996..18468020 (25 bp)
AAAGGACGTTTCATGGCGGCTGTGC
LOC_Os09g30330
Target Sequence 
GAGTGTCTACTGCTACAATCGTTTGATCGGATAAAAACCATCGAATCGGATCTAGAAAGGACTAAAAGAGTATTGCATAT
GACCCTGGTCAAGCAGATGGAGATGATGGAGACCTTGGAAGCTATGCAACATCACTACCAATCTTCCAGTGTCAGGAGGA
GATTGTGCTGTTCATAAGTAAAAGACTGCTCTTGTCTGGCTGGCCTTGAGCGACCATGAAGACTGAAGCTGTAGCCTGAA
AACCTTCTGCAAGTGCCATTTTTGACTCGGAGATCTTCAGCCCTGTGCAGAGGAAAGATCATCGCTCGCTCAGCTCTGTC
GCTGGCTTGCTGCATCGCAGCTTGTGAATCCGTTTTGGTAGCTGTTAATCTCAACAATAATCCCTTTTTTGCCTCCCTGA
ACATTACCAATAGCAAGATCAGTGATGCATCTGTCAGCTGCTGTAGCTCTCTGCTCTGAATTGGAGGATTGAAGGGAGAA
TCTGTTGTTACATTGTCTGAATTTTTGTGATCCATATGCTGAAAGGACGTTTCATGGCGGCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis