Browse Element(s) Details


Os.51737.1.S1_x_at

Description gb:AK063567.1
DB_XREF= gi:32973585
TID=Os.51737.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F10, full insert sequence.
FL= gb:AK063567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g329702/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51737.1.S1_x_at--1136--3791Chr12:19882890..19882914 (25 bp)
CTCGCCGGTGAGCAGCTAAAGCTAA
LOC_Os12g32970
Os.51737.1.S1_x_at--1085--3731Chr12:19882869..19882893 (25 bp)
CTAAGCTGAGGTTAGCCATGGCGGC
LOC_Os12g32970
Os.51737.1.S1_x_at--154--4111Chr12:19882269..19882293 (25 bp)
CGAACACGTGGTAGGCAAGGCTAGT
NONE
Os.51737.1.S1_x_at--50--5191Chr12:19882255..19882279 (25 bp)
GCAAGGCTAGTTTAGCTGCTTCGAT
NONE
Os.51737.1.S1_x_at--199--4771Chr12:19882241..19882265 (25 bp)
GCTGCTTCGATGGAGTTTAATTTCT
NONE
Os.51737.1.S1_x_at--434--3131Chr12:19882199..19882223 (25 bp)
AATTAAGCGAGACTGGCTCACTGAC
NONE
Os.51737.1.S1_x_at--698--5991Chr12:19882191..19882215 (25 bp)
GAGACTGGCTCACTGACACGTAATT
NONE
Os.51737.1.S1_x_at--658--4831Chr12:19882184..19882208 (25 bp)
GCTCACTGACACGTAATTAAGTTCG
NONE
Os.51737.1.S1_x_at--263--3091Chr12:19882146..19882170 (25 bp)
AATAACTGTTATGGGCTTATGGCTG
NONE
Os.51737.1.S1_x_at--683--8651Chr12:19882135..19882159 (25 bp)
TGGGCTTATGGCTGTGGATGATAAT
NONE
Os.51737.1.S1_x_at--1010--3131Chr12:19882110..19882134 (25 bp)
AATTAAGTCAGATTTGCCGACGACC
NONE
Target Sequence 
CTCGCCGGTGAGCAGCTAAAGCTAAGCTGAGGTTAGCCATGGCGGCGGCGATGGGGTTGGAGAGGAAGGCGAAGGTGGCG
GAGGTGGCGCTGCGGTGCGCGGTGTGCGCCCTGGCGGCGCTGGCGGCGGCGCTGGTGGGCACGGGAAGCCAGACGAGGAC
CTTCTTCTCGCTGGAGAAGAAGGCCAGGTTCACGGACATGAAGGCACTCGTCCTCCTCGTCGCCGCCCACGGCGCCGCCG
CCGTGTACAGCCTGCTCCAGCTGGCGCGGTGCGCCGCGGCCGCGGCGTGGAAAGGCGGCAGCAATGGCGGCGCGGCGGTG
GTGGCGTGGTCGGTGTTCTCGTGCGACCAGGCGGTGGCGTACGCGCTGATGGCGGCCGCAAGAGCAGCGCCGGCGCCGTC
TCCGGCAATGGCGCGAACACGTGGTAGGCAAGGCTAGTTTAGCTGCTTCGATGGAGTTTAATTTCTTTGTAGTTTCAGAA
TTAAATTAAGCGAGACTGGCTCACTGACACGTAATTAAGTTCGTTAAATCGTTGGTAATAACTGTTATGGGCTTATGGCT
GTGGATGATAATAATTAAGTCAGATTTGCCGACGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51737.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis