Browse Element(s) Details


Os.51741.1.S1_at

Description gb:AK063581.1
DB_XREF= gi:32973599
TID=Os.51741.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H10, full insert sequence.
FL= gb:AK063581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g259203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein
LOC_Os05g25990NANA5+15018231..15019229hypothetical protein
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51741.1.S1_at--486--9411Chr05:15000154..15000178 (25 bp)
TCGTCGCAGGCGAAACTATGGCATC
NONE
Os.51741.1.S1_at--627--4191Chr05:15000145..15000169 (25 bp)
GCGAAACTATGGCATCCCGGAGCAG
NONE
Os.51741.1.S1_at--144--9331Chr05:15000100..15000124 (25 bp)
TCGCCATGTGGCTCGTGGCGCTCAT
NONE
Os.51741.1.S1_at--807--8591Chr05:15000073..15000097 (25 bp)
TGGTCTTCCTGGTCGCCGGACCGCA
LOC_Os05g25920
Os.51741.1.S1_at--394--3911Chr05:15000012..15000036 (25 bp)
CTGGAACGCGCCTAGCATCGACGGG
LOC_Os05g25920
Os.51741.1.S1_at--804--1831Chr05:14999977..15000001 (25 bp)
ACGCGTCCGGCGTCGTCGACAAGTA
LOC_Os05g25920
Os.51741.1.S1_at--1127--8151Chr05:14999862..14999886 (25 bp)
GGAAGCCATGGAAAAGCGCCCGATT
NONE
Os.51741.1.S1_at--1114--2351Chr05:14999850..14999874 (25 bp)
AAAGCGCCCGATTGGAGATCGAGGT
NONE
Os.51741.1.S1_at--554--7651Chr05:14999820..14999844 (25 bp)
GGGAGATCTGCTGGTTCAATTCATA
NONE
Os.51741.1.S1_at--309--291Chr05:14999791..14999815 (25 bp)
ATAGATGCCACGGATACCAGCCTTT
NONE
Os.51741.1.S1_at--454--6471Chr05:14999779..14999803 (25 bp)
GATACCAGCCTTTTTCTTAATTTCT
NONE
Target Sequence 
TCGTCGCAGGCGAAACTATGGCATCCCGGAGCAGCAGCAGCCGGAGCCGTGCCGTCGCCATGTGGCTCGTGGCGCTCATG
GTGGTCTTCCTGGTCGCCGGACCGCAGCCGGCGTCCGCGGCGCGGCCGCTCCGGCCGGCCGGCTGGAACGCGCCTAGCAT
CGACGGGGAGGGCCACTACGCGTCCGGCGTCGTCGACAAGTACGCGCCNCTTCTGCTCTCCATGCTGCCGAGGGGCCCCG
TGACGCCGTCCGGCCCCAGCGGCGGCACCAACGGCGACGGCAACTGAGGAATGGAAGCCATGGAAAAGCGCCCGATTGGA
GATCGAGGTGCAGAGGGAGATCTGCTGGTTCAATTCATAAATCATAGATGCCACGGATACCAGCCTTTTTCTTAATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis