Browse Element(s) Details


Os.51816.1.S1_at

Description gb:AK063842.1
DB_XREF= gi:32973860
TID=Os.51816.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C02, full insert sequence.
FL= gb:AK063842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2055011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20490OsAffx.17800.1.S1_at11/119+12354828..12358222transporter, putative, expressed
LOC_Os09g20500OsAffx.17800.2.S1_at11/119+12359741..12362625hypothetical protein
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51816.1.S1_at--1066--1571Chr09:12386592..12386616 (25 bp)
AGCTCCAACTGAGGGTCACCTGGTG
LOC_Os09g20550
Os.51816.1.S1_at--960--3811Chr09:12386623..12386647 (25 bp)
CTGCCGATTGGGTTTTGGTGCTGAT
LOC_Os09g20550
Os.51816.1.S1_at--30--591Chr09:12386661..12386685 (25 bp)
ATGCCTACCTGCCTTCTGTTTTTTC
LOC_Os09g20550
Os.51816.1.S1_at--264--8611Chr09:12386710..12386734 (25 bp)
TGTGGTTTTGCTTCCTTTACCTCCT
LOC_Os09g20550
Os.51816.1.S1_at--1052--10671Chr09:12386721..12386745 (25 bp)
TTCCTTTACCTCCTTTACTGTGAAG
LOC_Os09g20550
Os.51816.1.S1_at--852--2731Chr09:12386743..12386767 (25 bp)
AAGAATGTCTTATAGGTCTGCACCT
LOC_Os09g20550
Os.51816.1.S1_at--615--1031Chr09:12386756..12386780 (25 bp)
AGGTCTGCACCTGAGATGTTTTTAC
LOC_Os09g20550
Os.51816.1.S1_at--714--6031Chr09:12386768..12386792 (25 bp)
GAGATGTTTTTACCTTGCTGCTTCA
LOC_Os09g20550
Os.51816.1.S1_at--229--10471Chr09:12386777..12386801 (25 bp)
TTACCTTGCTGCTTCAGCTGTTTCA
LOC_Os09g20550
Os.51816.1.S1_at--584--1611Chr09:12386792..12386816 (25 bp)
AGCTGTTTCATGGATGTTATGCTGA
LOC_Os09g20550
Os.51816.1.S1_at--503--6791Chr09:12386807..12386831 (25 bp)
GTTATGCTGAATGGCGACTCTCTTG
LOC_Os09g20550
Target Sequence 
AGCTCCAACTGAGGGTCACCTGGTGGTGGTGNNNCTGCCGATTGGGTTTTGGTGCTGATGCTGCTCTCTGCTATGCCTAC
CTGCCTTCTGTTTTTTCTTTCCCCCGGGGTGAGGAGAAGTTTGTGGTTTTGCTTCCTTTACCTCCTTTACTGTGAAGAAT
GTCTTATAGGTCTGCACCTGAGATGTTTTTACCTTGCTGCTTCAGCTGTTTCATGGATGTTATGCTGAATGGCGACTCTC
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis