Browse Element(s) Details


Os.5186.1.S1_at

Description gb:AK103609.1
DB_XREF= gi:32988818
TID=Os.5186.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133I10, full insert sequence.
FL= gb:AK103609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3339011/11prephenate dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein
LOC_Os04g33390Os.5186.1.S1_at11/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390OsAffx.29486.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33390Os.36927.2.S1_x_at1/114+19982191..19983852prephenate dehydratase family protein, expressed
LOC_Os04g33330Os.50591.2.S1_x_at11/114+19999435..20002011expressed protein
LOC_Os04g33330Os.50591.1.S1_at11/114+19999435..20002011expressed protein
LOC_Os04g33340OsAffx.26306.1.S1_s_at11/114+20002945..20003596hypothetical protein
LOC_Os04g33340OsAffx.26306.2.S1_at5/114+20002945..20003596hypothetical protein
LOC_Os04g33350Os.52915.1.S1_at4/114+20008218..20008718hypothetical protein
LOC_Os04g33350OsAffx.12985.3.S1_x_at1/114+20008218..20008718hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5186.1.S1_at--993--3791Chr04:19983509..19983533 (25 bp)
CTCGCCGAGGTGCAGGAGTACACCT
LOC_Os04g33390
Os.5186.1.S1_at--947--1031Chr04:19983516..19983540 (25 bp)
AGGTGCAGGAGTACACCTCCTTCCT
LOC_Os04g33390
Os.5186.1.S1_at--507--1391Chr04:19983650..19983674 (25 bp)
AGACGCGCATCGATCGAGTAGGGAC
LOC_Os04g33390
Os.5186.1.S1_at--841--6351Chr04:19983661..19983685 (25 bp)
GATCGAGTAGGGACGTTGGTTTCTT
LOC_Os04g33390
Os.5186.1.S1_at--29--1071Chr04:19983669..19983693 (25 bp)
AGGGACGTTGGTTTCTTGTGGTCAT
LOC_Os04g33390
Os.5186.1.S1_at--499--7871Chr04:19983678..19983702 (25 bp)
GGTTTCTTGTGGTCATGTCGTCCTA
LOC_Os04g33390
Os.5186.1.S1_at--229--10831Chr04:19983684..19983708 (25 bp)
TTGTGGTCATGTCGTCCTACTCATC
LOC_Os04g33390
Os.5186.1.S1_at--147--10691Chr04:19983718..19983742 (25 bp)
TTGCCGGGAGTAATTAATTTTGCCT
LOC_Os04g33390
Os.5186.1.S1_at--471--4451Chr04:19983739..19983763 (25 bp)
GCCTTTCATTTTTTCTTATTCTTCT
LOC_Os04g33390
Os.5186.1.S1_at--822--10411Chr04:19983754..19983778 (25 bp)
TTATTCTTCTTCTCGTCATTATACG
LOC_Os04g33390
Os.5186.1.S1_at--58--171Chr04:19983771..19983795 (25 bp)
ATTATACGTGTAATTGTTCCACTCC
LOC_Os04g33390
Target Sequence 
CTCGCCGAGGTGCAGGAGTACACCTCCTTCCTCCGGGTGCTCGNCAGCTACCCCATGGACATGACCCCCANGACCGCCGG
CTCCTCCTCCACCGTCACCTCCGACGATTCCTCCTCCACTTGACCGCCGCCGCCGACGAGGAGACGCGCATCGATCGAGT
AGGGACGTTGGTTTCTTGTGGTCATGTCGTCCTACTCATCCTCCCCCCATTGCCGGGAGTAATTAATTTTGCCTTTCATT
TTTTCTTATTCTTCTTCTCGTCATTATACGTGTAATTGTTCCACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis