Browse Element(s) Details


Os.51887.1.S1_x_at

Description gb:AK064195.1
DB_XREF= gi:32974213
TID=Os.51887.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D04, full insert sequence.
FL= gb:AK064195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3430010/11retrotransposon protein, putative, unclassified
LOC_Os11g459081/11retrotransposon protein, putative, unclassified
LOC_Os03g591901/11retrotransposon protein, putative, unclassified
LOC_Os07g097601/11retrotransposon protein, putative, unclassified
LOC_Os11g299601/11retrotransposon protein, putative, unclassified
LOC_Os11g361101/11retrotransposon protein, putative, unclassified
LOC_Os07g135601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51887.1.S1_x_at--545--4931Chr08:21395299..21395323 (25 bp)
GCATAATACCTTCACATCATACACC
LOC_Os08g34300
Os.51887.1.S1_x_at--409--10432Chr11:27261745..27261769 (25 bp)
TTATGTCCACTCTGAAACTATCCAA
LOC_Os11g45908
Os.51887.1.S1_x_at--643--7691Chr08:21395387..21395411 (25 bp)
GGGTCAGTAGAGTGCACATCATCAA
LOC_Os08g34300
Os.51887.1.S1_x_at--134--2531Chr08:21395414..21395438 (25 bp)
AACTTATCCTCTGACTTGCATGTTC
LOC_Os08g34300
Os.51887.1.S1_x_at--963--9051Chr08:21395430..21395454 (25 bp)
TGCATGTTCCTTCCTTTCCAGTAAA
LOC_Os08g34300
Os.51887.1.S1_x_at--873--9191Chr08:21395446..21395470 (25 bp)
TCCAGTAAACCTTCTCTCAGTTAGC
LOC_Os08g34300
Os.51887.1.S1_x_at--924--10451NONE
TTAGCCCAGCTATTGACCAACTCAA
NONE
Os.51887.1.S1_x_at--742--5971Chr08:21395510..21395534 (25 bp)
GAGAACTCTCATCTGTTCCAGGAGA
LOC_Os08g34300
Os.51887.1.S1_x_at--1024--6432Chr08:21395641..21395665 (25 bp)
GATCAGTTTGCTTCATTGTCAGTTA
LOC_Os08g34300
Os.51887.1.S1_x_at--1077--4911Chr08:21395755..21395779 (25 bp)
GCTTGGAAAACATACTCGGTCTACA
LOC_Os08g34300
Os.51887.1.S1_x_at--433--6618Chr11:20728358..20728380 (23 bp)
GATTGGTCTTCGTAACTGTGAGCCT
LOC_Os11g36110
Target Sequence 
GCATAATACCTTCACATCATACACCCCTTATGTCCACTCTGAAACTATCCAAATCGCTGATGGTACATCCAAACCTATTC
ATGGTATAGGGTCAGTAGAGTGCACATCATCAATAAACTTATCCTCTGACTTGCATGTTCCTTCCTTTCCAGTAAACCTT
CTCTCAGTTAGCCCAGCTATTGACCAACTCAAGTGCATTGTTGTATTTGATGAGAACTCTCATCTGTTCCAGGAGAAGGG
GACTGGGAGGAGGATTGGGACTAGAGTCAGGTGTGATGGGTTGTGGTACATCAATCATGAGGAACTGGGGCTAGCTGCGG
TGGTTGGAAATGTTGAGAAGGAGATCAGTTTGCTTCATTGTCAGTTAGGACATCCATCTTTTGAGAGTTTGAGTAAGTTG
TATCTAGATCTCTTTAGTAAAGTGGATAAGCATAGATTGGTGTGTGATGCTTGTGAGCTTGGAAAACATACTCGGTCTAC
ATATGTTGGGATTGGTCTTCGTAACTGTGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51887.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis