Browse Element(s) Details


Os.51965.1.S1_at

Description gb:AK064424.1
DB_XREF= gi:32974442
TID=Os.51965.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-C04, full insert sequence.
FL= gb:AK064424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6623010/11csAtPR5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein
LOC_Os01g66200Os.10888.1.S1_at11/111+38781690..38787380expressed protein
LOC_Os01g66210NANA1+38791018..38792447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66230Os.5538.1.S1_at11/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66230Os.51965.1.S1_at10/111+38796483..38802067csAtPR5, putative, expressed
LOC_Os01g66240Os.5195.1.S1_at11/111+38802496..38807631hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g66250Os.56653.1.S1_at11/111+38808114..38810854D-mannose binding lectin family protein, expressed
LOC_Os01g66260OsAffx.11755.1.S1_at11/111+38811386..38812453hypothetical protein
LOC_Os01g66270NANA1+38816449..38817018AP2 domain containing protein
LOC_Os01g66280Os.31998.1.S1_at11/111+38818122..38820969Uncharacterized ACR, COG1678 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51965.1.S1_at--939--71NONE
ATTGCCGACCCGACATGTCAAAGAG
NONE
Os.51965.1.S1_at--161--2792Chr03:16797138..16797162 (25 bp)
AAGAGACTTGGAGCAGGTTCCTCTC
NONE
Os.51965.1.S1_at--734--1011Chr01:38797012..38797036 (25 bp)
AGGTTCCTCTCCTTTTGCGAGATTG
LOC_Os01g66230
Os.51965.1.S1_at--848--3951Chr01:38796925..38796949 (25 bp)
CGGAGTGCAAGTCCCATGCATTCAA
LOC_Os01g66230
Os.51965.1.S1_at--238--4952Chr07:27375930..27375950 (21 bp)
GCATTCAAGATCAGGGACACCCAAT
NONE
Os.51965.1.S1_at--233--5752Chr07:27375814..27375838 (25 bp)
GACGGACCTTATCGATTCCCTTTAT
NONE
Os.51965.1.S1_at--97--10353Chr03:16797280..16797304 (25 bp)
TTTATCACCCACTTTGGCACATTGA
NONE
Os.51965.1.S1_at--269--1791Chr01:38796712..38796736 (25 bp)
ACCGCATTTACCATAGTGACTCGAC
LOC_Os01g66230
Os.51965.1.S1_at--563--10071Chr01:38796699..38796723 (25 bp)
TAGTGACTCGACCAATGGGCGCCAT
LOC_Os01g66230
Os.51965.1.S1_at--222--5751Chr01:38796648..38796672 (25 bp)
GACGGGCTATTTCTGTAGTTCCATT
LOC_Os01g66230
Os.51965.1.S1_at--1046--1471Chr01:38796525..38796549 (25 bp)
AGCAATGTCAAGCTGGTCCTCTCTG
LOC_Os01g66230
Target Sequence 
ATTGCCGACCCGACATGTCAAAGAGACTTGGAGCAGGTTCCTCTCCTTTTGCGAGATTGGAACGTTGAGTCCATGCCATG
GCTTTTCCGGCGATGTCCTCAGTTGCCAAGCCCAGCGGCACCGGAGTGCAAGTCCCATGCATTCAAGATCAGGGACACCC
AATCCACCATACGATTTGGGTGCACAAACCCGTGCCCAAGCGACCCGGCAGCTTCCACCACTAGCGCTTGCTTTCCCGGA
CGGGAGGAAGCCGCGACGGACCTTATCGATTCCCTTTATCACCCACTTTGGCACATTGATGGCCATCAGCAGATAGATCG
GTATTGAGATTAATACCGCATTTACCATAGTGACTCGACCAATGGGCGCCATCTGCTCTGCCTTCCATACCGGCAACCGA
CGGGCTATTTCTGTAGTTCCATTGTATGACTGTACCATATCTACTTGTATCTCATTGAACATTGAGGGAAAAATTAAAGT
ACAAACAAAACAAGGAGGAAATTTTTCATGGTTCCTAAGGCAGCAATGTCAAGCTGGTCCTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis