Browse Element(s) Details


Os.51973.1.S1_at

Description gb:AK064440.1
DB_XREF= gi:32974458
TID=Os.51973.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-E03, full insert sequence.
FL= gb:AK064440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4227011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed
LOC_Os05g42240OsAffx.4596.1.S1_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42240OsAffx.4596.1.S1_x_at11/115+24619173..24620423hypothetical protein
LOC_Os05g42250OsAffx.23819.2.S1_x_at11/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250Os.30886.3.S1_x_at3/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42250OsAffx.24019.1.S1_at1/115+24628899..24633405cation channel family protein, expressed
LOC_Os05g42260OsAffx.15071.1.S1_at11/115+24637663..24638412hypothetical protein
LOC_Os05g42260Os.53296.1.S1_at1/115+24637663..24638412hypothetical protein
LOC_Os05g42270Os.51973.1.S1_at11/115+24641118..24644053Acyltransferase family protein, expressed
LOC_Os05g42280Os.51003.1.S1_at10/115+24646272..24649682expressed protein
LOC_Os05g42280Os.11595.1.S2_at1/115+24646272..24649682expressed protein
LOC_Os05g42290OsAffx.15072.1.S1_at10/115+24652314..24654557Protein ULTRAPETALA2, putative
LOC_Os05g42300Os.48269.1.S1_at11/115+24655369..24659272NAF1 domain containing protein, expressed
LOC_Os05g42310NANA5+24661942..24665233retrotransposon protein, putative, unclassified
LOC_Os05g42320NANA5+24665861..24672016retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51973.1.S1_at--461--3051Chr05:24643456..24643480 (25 bp)
AATCGCATATAAGCATCGGCCACCG
LOC_Os05g42270
Os.51973.1.S1_at--862--471Chr05:24643470..24643494 (25 bp)
ATCGGCCACCGACTTTTATGGACAA
LOC_Os05g42270
Os.51973.1.S1_at--497--5331Chr05:24643574..24643598 (25 bp)
GAAGTCGCCGATTGGCTGATCGAGA
LOC_Os05g42270
Os.51973.1.S1_at--21--3251Chr05:24643615..24643639 (25 bp)
CAAGCTTCTGTCTGATTTCTCGGCA
LOC_Os05g42270
Os.51973.1.S1_at--954--5351Chr05:24643667..24643691 (25 bp)
GAAGATGATCTGTCCACACTCAAGT
LOC_Os05g42270
Os.51973.1.S1_at--147--6951Chr05:24643778..24643802 (25 bp)
GTAGCATTTAGCTCTGCTTTCCTTA
LOC_Os05g42270
Os.51973.1.S1_at--326--4891Chr05:24643793..24643817 (25 bp)
GCTTTCCTTACTTTTGCAACCTTAT
LOC_Os05g42270
Os.51973.1.S1_at--967--9011Chr05:24643807..24643831 (25 bp)
TGCAACCTTATACTCCATACATCTG
LOC_Os05g42270
Os.51973.1.S1_at--463--1111Chr05:24643896..24643920 (25 bp)
AGTGTAACCCTCAGCTGTGTATTAG
LOC_Os05g42270
Os.51973.1.S1_at--411--10211Chr05:24643929..24643953 (25 bp)
TATTACTACTCTGCTCAGAACCCAA
LOC_Os05g42270
Os.51973.1.S1_at--620--4971Chr05:24643967..24643991 (25 bp)
GCATCATCGCCATGTATACCTGTAT
LOC_Os05g42270
Target Sequence 
AATCGCATATAAGCATCGGCCACCGACTTTTATGGACAATGTTTATGGTATTGATCCTTCTGAAGTTCACATACATGTTA
AAATCATCCAAGTCTCTGACATACCCACCTCAGAAGATGAAGTCGCCGATTGGCTGATCGAGAGATTTAAACTGAAGAAC
AAGCTTCTGTCTGATTTCTCGGCACTTGGCCATTTCCCCAACGAAGGAACTGAAGATGATCTGTCCACACTCAAGTGCAT
CGCGAATTTTGTAGCGGTAATCAGCACAACGACCGTCCTCACGTACCTGACCCTGTTCTCGTCTGTATGGTTCAAGATTT
TCGTAGCATTTAGCTCTGCTTTCCTTACTTTTGCAACCTTATACTCCATACATCTGCCCCAGCTGATATGCTCCCCGGAA
GCTGGTACCCATGCCAAGAAATCCTGAAAGTATTTGTGCAAGTGTAACCCTCAGCTGTGTATTAGCAGAAAGATATTACT
ACTCTGCTCAGAACCCAACTTGTGGGTTGTGGCATCATCGCCATGTATACCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis