Browse Element(s) Details


Os.52005.1.S1_at

Description gb:AK064521.1
DB_XREF= gi:32974539
TID=Os.52005.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-F12, full insert sequence.
FL= gb:AK064521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5425411/11lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54230OsAffx.12636.1.S1_at11/112+33240246..33241154hypothetical protein
LOC_Os02g54240OsAffx.24862.1.S1_at11/112+33243932..33245233F-box domain containing protein
LOC_Os02g54254Os.13781.1.S1_at11/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54254Os.13781.1.S2_at11/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54254Os.52005.1.S1_at11/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54254Os.15865.1.A1_at2/112+33247232..33260417lysine ketoglutarate reductase/saccharopine dehydrogenase, putative, expressed
LOC_Os02g54270OsAffx.22004.1.S1_at1/112+33269694..33272939retrotransposon protein, putative, unclassified
LOC_Os02g54280OsAffx.24863.1.S1_x_at6/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51970.1.S1_at2/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51049.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.8166.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.26082.3.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.2147.1.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019477biological_processL-lysine catabolism
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0004753molecular_functionsaccharopine dehydrogenase activity
GO:0010010molecular_functionlysine-ketoglutarate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52005.1.S1_at--336--5511Chr02:33254491..33254515 (25 bp)
GAACACATGTTTCTTTTTGATGCAC
LOC_Os02g54254
Os.52005.1.S1_at--279--251Chr02:33254440..33254464 (25 bp)
ATATGGCGTCTATAGTTTGGGAATT
LOC_Os02g54254
Os.52005.1.S1_at--976--10351Chr02:33254404..33254428 (25 bp)
TTTTTGGAACAATCTGCTACTCATT
LOC_Os02g54254
Os.52005.1.S1_at--669--451Chr02:33254393..33254417 (25 bp)
ATCTGCTACTCATTGATGGCATGTC
LOC_Os02g54254
Os.52005.1.S1_at--553--6231Chr02:33254379..33254403 (25 bp)
GATGGCATGTCAAATTCAGAGCTTG
LOC_Os02g54254
Os.52005.1.S1_at--500--2271Chr02:33254347..33254371 (25 bp)
AAATCATTTTCTTTTCTATGCACAC
LOC_Os02g54254
Os.52005.1.S1_at--127--10571Chr02:33254334..33254358 (25 bp)
TTCTATGCACACTTATTCAGGATAA
LOC_Os02g54254
Os.52005.1.S1_at--578--2211Chr02:33254303..33254327 (25 bp)
AAATTACATGGTGTTTCTAGCTTGG
LOC_Os02g54254
Os.52005.1.S1_at--421--8631Chr02:33254281..33254305 (25 bp)
TGGGAAATTAATTGTTCCTGTTCCT
LOC_Os02g54254
Os.52005.1.S1_at--986--6691Chr02:33254268..33254292 (25 bp)
GTTCCTGTTCCTAAAATTATCAATC
LOC_Os02g54254
Os.52005.1.S1_at--378--2251Chr02:33254255..33254279 (25 bp)
AAATTATCAATCTCCTGCTACCACT
LOC_Os02g54254
Target Sequence 
GAACACATGTTTCTTTTTGATGCACAGTTATTTAGAATTAAAATCAATATTATATGGCGTCTATAGTTTGGGAATTAATT
ATTGCTATTTTTGGAACAATCTGCTACTCATTGATGGCATGTCAAATTCAGAGCTTGAAGTAAGAAATCATTTTCTTTTC
TATGCACACTTATTCAGGATAAAAAACAAAATTACATGGTGTTTCTAGCTTGGGAAATTAATTGTTCCTGTTCCTAAAAT
TATCAATCTCCTGCTACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis