Browse Element(s) Details


Os.52078.1.S1_at

Description gb:AK107189.1
DB_XREF= gi:32992398
TID=Os.52078.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H12, full insert sequence.
FL= gb:AK107189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0731011/11Axi 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07260OsAffx.12763.1.S1_at11/113+3684278..3685888TPR Domain containing protein
LOC_Os03g07270Os.48500.1.A1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270Os.38457.1.S1_s_at11/113+3686298..3687608expressed protein
LOC_Os03g07270OsAffx.3864.1.S1_x_at1/113+3686298..3687608expressed protein
LOC_Os03g07290Os.14697.1.S1_at11/113+3690248..3692364ribosomal protein L32 containing protein, expressed
LOC_Os03g07310Os.52078.1.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07310Os.52078.2.S1_at11/113+3692603..3700216Axi 1 protein, putative, expressed
LOC_Os03g07300Os.12622.1.S1_at10/113+3693033..3696507Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320NANA3+3702087..3702740transposon protein, putative, Pong sub-class
LOC_Os03g07330OsAffx.3162.1.S1_at11/113+3703740..3705272pentatricopeptide, putative
LOC_Os03g07340Os.12963.1.S1_at11/113+3706875..370803350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.2.S1_x_at11/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350OsAffx.12764.1.S1_at1/113+3708333..3712595glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360Os.11987.1.S1_at11/113+3717979..3720806Dof domain, zinc finger family protein, expressed
LOC_Os03g07370Os.10433.1.S1_at11/113+3723554..3725197HNH endonuclease domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52078.1.S1_at--1118--9471Chr03:3696665..3696689 (25 bp)
TCTCCTGTTGTATAGGTCAGCCTTT
LOC_Os03g07310
Os.52078.1.S1_at--1028--271Chr03:3696654..3696678 (25 bp)
ATAGGTCAGCCTTTTCGCTTTGCGA
LOC_Os03g07310
Os.52078.1.S1_at--893--10631Chr03:3696641..3696665 (25 bp)
TTCGCTTTGCGATTGATTGATTCAT
LOC_Os03g07310
Os.52078.1.S1_at--191--8831Chr03:3696628..3696652 (25 bp)
TGATTGATTCATTTTTCACTTGCCG
LOC_Os03g07310
Os.52078.1.S1_at--622--10311Chr03:3696615..3696639 (25 bp)
TTTCACTTGCCGAATGCAGAATATG
LOC_Os03g07310
Os.52078.1.S1_at--769--5031Chr03:3696600..3696624 (25 bp)
GCAGAATATGAATGCCCTTCTAAAG
LOC_Os03g07310
Os.52078.1.S1_at--659--3151Chr03:3696569..3696593 (25 bp)
AATTGGGCTGGTTGTTTACTGTTCG
LOC_Os03g07310
Os.52078.1.S1_at--2--6651Chr03:3696559..3696583 (25 bp)
GTTGTTTACTGTTCGTGTTCATGAC
LOC_Os03g07310
Os.52078.1.S1_at--600--6711Chr03:3696549..3696573 (25 bp)
GTTCGTGTTCATGACAATCAATTAA
LOC_Os03g07310
Os.52078.1.S1_at--664--3131Chr03:3696526..3696550 (25 bp)
AATTCATGATGATAGCCAAAGCAAA
LOC_Os03g07310
Os.52078.1.S1_at--970--1471Chr03:3696507..3696531 (25 bp)
AGCAAAATACATGCTTTTCTATGAA
LOC_Os03g07310
Target Sequence 
TCTCCTGTTGTATAGGTCAGCCTTTTCGCTTTGCGATTGATTGATTCATTTTTCACTTGCCGAATGCAGAATATGAATGC
CCTTCTAAAGCATGTAAATTGGGCTGGTTGTTTACTGTTCGTGTTCATGACAATCAATTAATTCATGATGATAGCCAAAG
CAAAATACATGCTTTTCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis