Browse Element(s) Details

Os.52078.2.S1_at

Description

gb:AK064675.1
DB_XREF= gi:32974693
TID=Os.52078.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F02, full insert sequence.
FL= gb:AK064675.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g07310	11/11	Axi 1 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g07220	OsAffx.25003.1.S1_at	11/11	3	+	3669116..3673548	pentatricopeptide, putative
LOC_Os03g07234	Os.13504.1.S1_s_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07234	OsAffx.25004.1.S1_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07234	OsAffx.12761.1.S1_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07234	Os.13561.1.S1_s_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07250	Os.5752.1.S1_s_at	11/11	3	+	3681052..3683171	Cytochrome P450 family protein, expressed
LOC_Os03g07250	OsAffx.12762.1.S1_x_at	11/11	3	+	3681052..3683171	Cytochrome P450 family protein, expressed
LOC_Os03g07260	OsAffx.12763.1.S1_at	11/11	3	+	3684278..3685888	TPR Domain containing protein
LOC_Os03g07270	Os.48500.1.A1_s_at	11/11	3	+	3686298..3687608	expressed protein
LOC_Os03g07270	Os.38457.1.S1_s_at	11/11	3	+	3686298..3687608	expressed protein
LOC_Os03g07270	OsAffx.3864.1.S1_x_at	1/11	3	+	3686298..3687608	expressed protein
LOC_Os03g07290	Os.14697.1.S1_at	11/11	3	+	3690248..3692364	ribosomal protein L32 containing protein, expressed
LOC_Os03g07310	Os.52078.1.S1_at	11/11	3	+	3692603..3700216	Axi 1 protein, putative, expressed
LOC_Os03g07310	Os.52078.2.S1_at	11/11	3	+	3692603..3700216	Axi 1 protein, putative, expressed
LOC_Os03g07300	Os.12622.1.S1_at	10/11	3	+	3693033..3696507	Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320	NA	NA	3	+	3702087..3702740	transposon protein, putative, Pong sub-class
LOC_Os03g07330	OsAffx.3162.1.S1_at	11/11	3	+	3703740..3705272	pentatricopeptide, putative
LOC_Os03g07340	Os.12963.1.S1_at	11/11	3	+	3706875..3708033	50S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350	OsAffx.12764.2.S1_at	11/11	3	+	3708333..3712595	glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350	OsAffx.12764.2.S1_x_at	11/11	3	+	3708333..3712595	glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350	OsAffx.12764.1.S1_at	1/11	3	+	3708333..3712595	glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07360	Os.11987.1.S1_at	11/11	3	+	3717979..3720806	Dof domain, zinc finger family protein, expressed
LOC_Os03g07370	Os.10433.1.S1_at	11/11	3	+	3723554..3725197	HNH endonuclease domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52078.2.S1_at--464--255	1	Chr03:3693129..3693153 (25 bp)	AACTCCCTCTCGAGGAGCAGCGAGA	LOC_Os03g07310
Os.52078.2.S1_at--184--165	1	Chr03:3692987..3693011 (25 bp)	AGCCGGTCCACATAAATCGCAGCGT	LOC_Os03g07310
Os.52078.2.S1_at--932--755	1	Chr03:3692960..3692984 (25 bp)	GGGCCAGCGAATTTCGTCGCGTTTT	LOC_Os03g07310
Os.52078.2.S1_at--1063--947	1	Chr03:3692894..3692918 (25 bp)	TCTGAGGCGAGCCAGCCAAGGCCAA	LOC_Os03g07310
Os.52078.2.S1_at--362--321	1	Chr03:3692878..3692902 (25 bp)	CAAGGCCAAGCCAACGACCGCGGTT	LOC_Os03g07310
Os.52078.2.S1_at--1080--747	1	Chr03:3692818..3692842 (25 bp)	GTGTGGTTGCAGCATTTTTGCACCT	LOC_Os03g07310
Os.52078.2.S1_at--889--233	1	Chr03:3692765..3692789 (25 bp)	AAAGAGCATCCGCATCTCGAACTGG	LOC_Os03g07310
Os.52078.2.S1_at--248--547	1	Chr03:3692747..3692771 (25 bp)	GAACTGGCATCTCTCTTCCAGTCTT	LOC_Os03g07310
Os.52078.2.S1_at--192--1065	1	Chr03:3692711..3692735 (25 bp)	TTCCGTGCGGCAGTGGCGAAACTAT	LOC_Os03g07310
Os.52078.2.S1_at--874--459	1	Chr03:3692696..3692720 (25 bp)	GCGAAACTATACTATGTGCCAGATT	LOC_Os03g07310
Os.52078.2.S1_at--1154--727	1	Chr03:3692681..3692705 (25 bp)	GTGCCAGATTCCTAATTTCGGACTT	LOC_Os03g07310

Target Sequence

AACTCCCTCTCGAGGAGCAGCGAGAGCTTTTGATTTGGTGAAGCGGTGGCGGCTAGGAGGCGTCGCGTAGGAGGAGAGGA
GAGGAGNNNNNANTCNNNNNNCNNTNNNNNTNNNNATCTGCTCGCTGCTGCACCCAAGCCGCAGCCGGTCCACATAAATC
GCAGCGTGGGGGCCAGCGAATTTCGTCGCGTTTTTGGGTTGGGGAGGAGTTTTTGGTTGGTTAGTTGGTGGCGGCTCTGA
GGCGAGCCAGCCAAGGCCAAGCCAACGACCGCGGTTTCGTCCTCTACCAAACCCGCACCACCACTGCGCGCGTGTGGTTG
CAGCATTTTTGCACCTGCACCGCACCGGAAACGGCACGAAAATGAAAGAGCATCCGCATCTCGAACTGGCATCTCTCTTC
CAGTCTTCCTCGCCCACCTTCCGTGCGGCAGTGGCGAAACTATACTATGTGCCAGATTCCTAATTTCGGACTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis