Browse Element(s) Details


Os.5212.2.S1_at

Description gb:AK099506.1
DB_XREF= gi:32984715
TID=Os.5212.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029B16, full insert sequence.
FL= gb:AK099506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g457806/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5212.2.S1_at--364--8452Chr05:21429070..21429094 (25 bp)
TGGTTTCCTTTTAGGCGAACGGCTG
NONE
Os.5212.2.S1_at--391--5053Chr05:21429131..21429155 (25 bp)
GCAGAAAGGAAGGAACACCAGCAAT
NONE
Os.5212.2.S1_at--882--3211Chr05:21429162..21429186 (25 bp)
CAAGGGCTTGTTGAACTTCTCAGAC
NONE
Os.5212.2.S1_at--217--5491Chr05:21429174..21429198 (25 bp)
GAACTTCTCAGACGAGTATGCAGCA
NONE
Os.5212.2.S1_at--647--5933Chr05:21429238..21429262 (25 bp)
GAGCAGAACACGATCGAGAGAAAAG
NONE
Os.5212.2.S1_at--104--8153Chr05:21429262..21429286 (25 bp)
GGACAAACTTGTGTGCATATGTACT
NONE
Os.5212.2.S1_at--121--6833Chr05:21429289..21429313 (25 bp)
GTTTACCATGTCAACATTCACAGAT
NONE
Os.5212.2.S1_at--1134--6451Chr05:21429311..21429335 (25 bp)
GATAATTCCCTGAAGCAATTCTATA
NONE
Os.5212.2.S1_at--1090--3013Chr05:21429358..21429382 (25 bp)
AATGCTCAAGTGTATCGTCTCTGCT
NONE
Os.5212.2.S1_at--524--2873Chr05:21429365..21429389 (25 bp)
AAGTGTATCGTCTCTGCTCTGAGTT
NONE
Os.5212.2.S1_at--996--10592Chr05:21429388..21429412 (25 bp)
TTCTGAACTTTGAACATGCAAGCGA
NONE
Target Sequence 
TGGTTTCCTTTTAGGCGAACGGCTGCTGCGCCTCGAGGAGAGCGGGGTGGTTGGGGTACAGGCAGAAAGGAAGGAACACC
AGCAATAAAAATCAAGGGCTTGTTGAACTTCTCAGACGAGTATGCAGCAACAAACCAGCCGTCCAGATCAACCTCAACTC
AACCTGGCGAGCAGAACACGATCGAGAGAAAAGGACAAACTTGTGTGCATATGTACTATGTTTACCATGTCAACATTCAC
AGATAATTCCCTGAAGCAATTCTATAANAATCCTGCCATTTTGAGCAAAATGCTCAAGTGTATCGTCTCTGCTCTGAGTT
CTGAACTTTGAACATGCAAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5212.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis