Browse Element(s) Details


Os.52160.1.S1_at

Description gb:AK065382.1
DB_XREF= gi:32975400
TID=Os.52160.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013013B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013013B03, full insert sequence.
FL= gb:AK065382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g121601/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52160.1.S1_at--261--7191Chr11:11364400..11364424 (25 bp)
GTCGGTGACTCGGAGACGCCTCTAT
NONE
Os.52160.1.S1_at--406--6451Chr11:11364340..11364364 (25 bp)
GATACCTTGAACCTAACGAAGCTGA
NONE
Os.52160.1.S1_at--555--6611Chr11:11364206..11364230 (25 bp)
GATTGGCACACATGCATCTCATCAA
NONE
Os.52160.1.S1_at--394--7213Chr11:22101293..22101316 (24 bp)
GTCGACTTAGTTCGCACCAACAAAG
NONE
Os.52160.1.S1_at--265--5072Chr11:22101305..22101328 (24 bp)
GCACCAACAAAGTTCTGGCACCATA
NONE
Os.52160.1.S1_at--68--8251Chr11:11364103..11364127 (25 bp)
GGCACCATAGGCCAAGCGCATATTT
NONE
Os.52160.1.S1_at--167--10351Chr11:11364081..11364105 (25 bp)
TTTTTCATCAACACCGTGCACTTGC
NONE
Os.52160.1.S1_at--667--10711Chr11:11364060..11364084 (25 bp)
TTGCGGACTTATTTGTAGCCATCAC
NONE
Os.52160.1.S1_at--1161--7371Chr11:11364011..11364035 (25 bp)
GTGATGATAAGTTACCCGAGGGTGA
NONE
Os.52160.1.S1_at--416--372Chr11:11363912..11363936 (25 bp)
ATCAATAGCATTGGATCCTCTCATG
NONE
Os.52160.1.S1_at--389--7971Chr11:11363900..11363924 (25 bp)
GGATCCTCTCATGCTCAATAAATTC
NONE
Target Sequence 
GTCGGTGACTCGGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAACCTAACGAA
GCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGGAATACTGAAAGCAATGCTATTTGATATAT
TGTTTACATATCTTGCTAGTTACATGATCAAACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGC
TAAGCAGATCTCCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCAAGCGCATAT
TTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAACAACAGGGAGAGGGGGCGGTGATGATAAG
TTACCCGAGGGTGACCCGGCAGGGCCCTGGGGTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTA
TATATCCTATCAATAGCATTGGATCCTCTCATGCTCAATAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis