Browse Element(s) Details


Os.52227.1.S1_at

Description gb:AK065751.1
DB_XREF= gi:32975769
TID=Os.52227.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039B04, full insert sequence.
FL= gb:AK065751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g640201/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein
LOC_Os01g64060NANA1+37531704..37532972retrotransposon protein, putative, unclassified
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52227.1.S1_at--203--8711NONE
TGTCCAGCAGCGCAGTATACAGGGC
NONE
Os.52227.1.S1_at--987--10171NONE
TATACAGGGCCTACCTCAAGAGCAA
NONE
Os.52227.1.S1_at--614--2131NONE
ACAGTTCTCAGTCAGCAGTCATGCA
NONE
Os.52227.1.S1_at--1063--1331NONE
AGAGTAGCAGCCACAGCTGACTCAC
NONE
Os.52227.1.S1_at--555--9911NONE
TACTCCTCCCTGCTCGAAGAGATAG
NONE
Os.52227.1.S1_at--442--1271NONE
AGATAGCGCAGGACCACGACGACTA
NONE
Os.52227.1.S1_at--855--8251NONE
GGCAGTAACTTGTCTACGCGAATAA
NONE
Os.52227.1.S1_at--913--231NONE
ATATCGAATCGCCAAAATCTCCCTC
NONE
Os.52227.1.S1_at--84--9311NONE
TCCCTCGTCCTTGTCGAAACTGTTA
NONE
Os.52227.1.S1_at--1099--3071Chr01:37512698..37512721 (24 bp)
AATAGCATCGATCGCTCCGTCATGA
LOC_Os01g64020
Os.52227.1.S1_at--266--7851NONE
GGTACCCGTTCACAGTTGTCGACAG
NONE
Target Sequence 
TGTCCAGCAGCGCAGTATACAGGGCCTACCTCAAGAGCAACCAGACACACAACAGCAGACACCCAGCAGCNAAGGAGGTC
ACTGAATGGTGAACCATCTGATGATTCACAGCTACAAGACGCAGGCATAAGCTGCCTGCCTCACCACACAGTTCTCAGTC
AGCAGTCATGCAGCTCACAGCACTCACACAGCAGCAGCACGCTGNCACGGAAGGAGGACGACGCATGACAAGAGTAGCAG
CCACAGCTGACTCACTGCGTCGTGACTGCGTGCTACCTACGCGACTCGTCCACCTTGCTTGATCTTCTTCTCGCGTTCGC
GCTCCTCACTGCNTCCANCAGAGNTTACCTTACTACTCCGCAGTTCTACTCCTCCCTGCTCGAAGAGATAGCGCAGGACC
ACGACGACTAGCTCTCCTCACATCCGGTAAACGGCAGTAACTTGTCTACGCGAATAATGCTGTCATATCGAATCGCCAAA
ATCTCCCTCGTCCTTGTCGAAACTGTTATGAATCGGTAGTGACAATAGCATCGATCGCTCCGTCATGACACCGGTACCCG
TTCACAGTTGTCGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis