Browse Element(s) Details


Os.52234.1.S1_at

Description gb:AK065791.1
DB_XREF= gi:32975809
TID=Os.52234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043N01, full insert sequence.
FL= gb:AK065791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0291011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein
LOC_Os02g02920Os.8939.1.S1_s_at11/112+1134727..1139272HVA22-like protein i, putative, expressed
LOC_Os02g02930Os.57103.1.S1_at11/112+1145837..1151141Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g02940Os.5096.1.S1_at9/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02940OsAffx.16354.1.S1_x_at1/112+1151848..1154292succinate dehydrogenase subunit 3, putative, expressed
LOC_Os02g02950Os.56181.1.S1_at11/112+1154674..1156855pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52234.1.S1_at--695--7611Chr02:1126961..1126985 (25 bp)
GGGAATTTGACGCACACTGCACTAC
LOC_Os02g02910
Os.52234.1.S1_at--818--3311Chr02:1126583..1126966 (25 bp)
CACTACTACTTCAACAGATGCCACA
LOC_Os02g02910
Os.52234.1.S1_at--699--3451Chr02:1126560..1126584 (25 bp)
CAGTACATGTGCAATCCAAACCCAG
LOC_Os02g02910
Os.52234.1.S1_at--481--791Chr02:1126473..1126497 (25 bp)
ATGTGGCAGTTTCAATTCCCTCAAT
LOC_Os02g02910
Os.52234.1.S1_at--499--3091Chr02:1126451..1126475 (25 bp)
AATACCATCATCCAAGGCCAGACGC
LOC_Os02g02910
Os.52234.1.S1_at--894--1311Chr02:1126316..1126340 (25 bp)
AGATGGAGCTCTTCTGCTCGCCGTA
LOC_Os02g02910
Os.52234.1.S1_at--319--4531Chr02:1126273..1126297 (25 bp)
GCCGCCGCAGCTGAGGTTGATCTAG
LOC_Os02g02910
Os.52234.1.S1_at--19--2431Chr02:1126234..1126258 (25 bp)
AAAACTGTCACTGCTGCTGTTTCTG
LOC_Os02g02910
Os.52234.1.S1_at--919--4731Chr02:1126219..1126243 (25 bp)
GCTGTTTCTGTGTGTTCATCTGACA
LOC_Os02g02910
Os.52234.1.S1_at--842--10751Chr02:1126162..1126186 (25 bp)
TTGACAGTCACAGATGCCAATGGGT
LOC_Os02g02910
Os.52234.1.S1_at--1062--6271Chr02:1126113..1126137 (25 bp)
GATGTTTTATGTTGCTCGATCGAAA
LOC_Os02g02910
Target Sequence 
GGGAATTTGACGCACACTGCACTACTACTTCAACAGATGCCACAGTACATGTGCAATCCAAACCCAGCCATTATGAAGAT
TCAGCAGCAGCTCATGCCCAATCAGCATCAGCATCAGCAGCAGCAGCAGATGTGGCAGTTTCAATTCCCTCAATACCATC
ATCCAAGGCCAGACGCCGCCGCCGCCGCCGTGTCGGCGGCGTGGCAGCACAGCAGCCGGCTCCACGACGTCTCTTCCCTG
CGTCCGGTGGCCGTGCTGCCTGCGCCGCCGCCGCCACCGCCGCCGCAGATGGAGCTCTTCTGCTCGCCGTACCATGGCGG
CAGCAGACAGCCGCCGCAGCTGAGGTTGATCTAGCTTATTAGCATAGCAAAACTGTCACTGCTGCTGTTTCTGTGTGTTC
ATCTGACAAAAAGGAATTTTCAGACAAGTTGACATGACATTTGACAGTCACAGATGCCAATGGGTGGCAAAAAGCTGTAA
TTAATTTGAGATGTTTTATGTTGCTCGATCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis