Browse Element(s) Details


Os.52263.1.S1_at

Description gb:AK065964.1
DB_XREF= gi:32975982
TID=Os.52263.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046G18, full insert sequence.
FL= gb:AK065964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5073011/11Matrixin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005578cellular_componentextracellular matrix (sensu Metazoa)
GO:0031225cellular_componentanchored to membrane
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52263.1.S1_at--505--5831Chr02:30975452..30975476 (25 bp)
GACCTGGAGTCCGACGACGTCCTGG
LOC_Os02g50730
Os.52263.1.S1_at--85--331Chr02:30975425..30975449 (25 bp)
ATACAGAGCCTGTACGGGACCAACC
LOC_Os02g50730
Os.52263.1.S1_at--252--6711Chr02:30975306..30975330 (25 bp)
GTTCGTTGGATTAGTTGTGCCGGCA
LOC_Os02g50730
Os.52263.1.S1_at--928--8691Chr02:30975291..30975315 (25 bp)
TGTGCCGGCAGTTGTCCTGCTCTTA
LOC_Os02g50730
Os.52263.1.S1_at--77--4831Chr02:30975273..30975297 (25 bp)
GCTCTTAGCTCCGTAGACTTTCTAG
LOC_Os02g50730
Os.52263.1.S1_at--883--5691Chr02:30975258..30975282 (25 bp)
GACTTTCTAGTCCATTTTTCGTGCC
LOC_Os02g50730
Os.52263.1.S1_at--1100--151Chr02:30975245..30975269 (25 bp)
ATTTTTCGTGCCTCGGTGTTGCCAC
LOC_Os02g50730
Os.52263.1.S1_at--636--10691Chr02:30975227..30975251 (25 bp)
TTGCCACGTCCATCTCTGGTTCTAT
LOC_Os02g50730
Os.52263.1.S1_at--940--3771Chr02:30975214..30975238 (25 bp)
CTCTGGTTCTATTTCTTGTACGATA
LOC_Os02g50730
Os.52263.1.S1_at--231--10231Chr02:30975186..30975210 (25 bp)
TATTGTTGACTTTTGGACAGATTCT
LOC_Os02g50730
Os.52263.1.S1_at--638--8111Chr02:30975172..30975196 (25 bp)
GGACAGATTCTTGTGTACATAACAT
LOC_Os02g50730
Target Sequence 
GACCTGGAGTCCGACGACGTCCTGGGGATACAGAGCCTGTACGGGACCAACCCAAACTTCAAGGGCGTCACGCCGACGTC
GCCGTCGACGAGCAGCCGGGAGATGGACGGCAGCGCGGCCGCCGCCGGCATCCGGCCGTGGAGTGGGTTCGTTGGATTAG
TTGTGCCGGCAGTTGTCCTGCTCTTAGCTCCGTAGACTTTCTAGTCCATTTTTCGTGCCTCGGTGTTGCCACGTCCATCT
CTGGTTCTATTTCTTGTACGATAGATTATTGTTGACTTTTGGACAGATTCTTGTGTACATAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis