Browse Element(s) Details


Os.52267.1.S1_at

Description gb:AK101557.1
DB_XREF= gi:32986766
TID=Os.52267.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050C11, full insert sequence.
FL= gb:AK101557.1 gb:AK065974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22300OsAffx.29789.1.S1_x_at7/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22300OsAffx.29789.3.S1_x_at3/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22300OsAffx.31885.2.S1_x_at2/116+12944070..12951194hAT family dimerisation domain containing protein
LOC_Os06g22310NANA6+12951373..12952942hypothetical protein
LOC_Os06g22320OsAffx.13097.1.S1_s_at5/116+12955392..12960183Zinc knuckle family protein
LOC_Os06g22320OsAffx.15500.1.S1_x_at1/116+12955392..12960183Zinc knuckle family protein
LOC_Os06g22330Os.52267.1.S1_at11/116+12961886..12965474expressed protein
LOC_Os06g22340Os.49566.1.S1_at11/116+12966331..12968078Cytochrome P450 89A2, putative, expressed
LOC_Os06g22350OsAffx.4900.1.S1_at11/116+12972930..12977457expressed protein
LOC_Os06g22350OsAffx.13875.1.S1_at1/116+12972930..12977457expressed protein
LOC_Os06g22360OsAffx.27767.1.S1_at11/116+12982167..12982889hypothetical protein
LOC_Os06g22370OsAffx.15553.1.S1_at11/116+12987185..12989509hypothetical protein
LOC_Os06g22380Os.9581.1.S1_a_at11/116+12990293..12999795expressed protein
LOC_Os06g22380Os.50783.1.S1_x_at4/116+12990293..12999795expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005773cellular_componentvacuole
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52267.1.S1_at--294--1651Chr06:12964909..12964933 (25 bp)
AGCCCTGCCGGAAATTCGTGCCGAA
LOC_Os06g22330
Os.52267.1.S1_at--5--7671Chr06:12964965..12964989 (25 bp)
GGGATACCCTACGTCTACGATGATA
LOC_Os06g22330
Os.52267.1.S1_at--205--7991Chr06:12965042..12965066 (25 bp)
GGATGTCCATACATAGCATCTGGAT
LOC_Os06g22330
Os.52267.1.S1_at--1032--711Chr06:12965089..12965113 (25 bp)
ATGATTTTATTCTTTCGGACGCCGT
LOC_Os06g22330
Os.52267.1.S1_at--90--1771Chr06:12965125..12965149 (25 bp)
ACCTGTTGCCGTCTGTTCTGTGCTT
LOC_Os06g22330
Os.52267.1.S1_at--662--9071Chr06:12965145..12965169 (25 bp)
TGCTTCAAGCCGCAACTCTGAGAAT
LOC_Os06g22330
Os.52267.1.S1_at--781--6011Chr06:12965176..12965200 (25 bp)
GAGAGGATCTAACTCCAGTGTCCAA
LOC_Os06g22330
Os.52267.1.S1_at--1081--3451Chr06:12965191..12965215 (25 bp)
CAGTGTCCAAGCAGCGCTGTAAAGT
LOC_Os06g22330
Os.52267.1.S1_at--392--5151Chr06:12965253..12965277 (25 bp)
GCAACACGCCTTTGTGGCTCAATAT
LOC_Os06g22330
Os.52267.1.S1_at--661--1111Chr06:12965314..12965338 (25 bp)
AGTGTTGTGCTCCAATCTCTTTATA
LOC_Os06g22330
Os.52267.1.S1_at--148--7051Chr06:12965405..12965429 (25 bp)
GTAAAGTTTGTCTCATTGTCTGCTA
LOC_Os06g22330
Target Sequence 
AGCCCTGCCGGAAATTCGTGCCGAAACCCGCCAATGGCAGTAAGGTAATGTTCGAGGGGATACCCTACGTCTACGATGAT
AACATGAAGCGCTTGGCAGGGGAGATCAGACGCTTTGAGAAGCAGACGATTGGGGATGTCCATACATAGCATCTGGATGC
AAAACTTTGCTGGTACATATATGATTTTATTCTTTCGGACGCCGTCGGCGGTGTCCACCTGTTGCCGTCTGTTCTGTGCT
TCAAGCCGCAACTCTGAGAATCAGAGGGAGAGGATCTAACTCCAGTGTCCAAGCAGCGCTGTAAAGTTATGGTTCTNTTC
AGCATTCTCCTCTTCGTGCAGGGGGCAACACGCCTTTGTGGCTCAATATCCTTTCTTTCCTTTGTTCCTTTCCCTTCTTC
TCCCTAGTGTTGTGCTCCAATCTCTTTATAGATTTGTGCTTATTAGACTGACAGTGTGCCTTCATCAGATTCTTCTCATC
TCTTATTGGGGGCATTGTAAAGTTTGTCTCATTGTCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis