Browse Element(s) Details


Os.52308.1.S1_at

Description gb:AK066290.1
DB_XREF= gi:32976308
TID=Os.52308.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066I06, full insert sequence.
FL= gb:AK066290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1654011/11wall-associated kinase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16500Os.35344.18.S1_x_at10/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500Os.35344.3.S1_x_at9/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500OsAffx.22940.5.S1_x_at3/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16510OsAffx.7612.1.S1_at11/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.55820.1.S1_at9/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.32925.1.S1_at1/1112+9451263..9454464hypothetical protein
LOC_Os12g16520Os.54238.1.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16520OsAffx.18050.2.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16530OsAffx.19704.1.S1_at11/1112+9471444..9471847hypothetical protein
LOC_Os12g16540Os.52308.1.S1_at11/1112+9473783..9476226wall-associated kinase-like 1, putative, expressed
LOC_Os12g16550OsAffx.7613.1.S1_at11/1112+9477854..9478101hypothetical protein
LOC_Os12g16559Os.37711.3.S1_x_at1/1112+9480158..9480942NA
LOC_Os12g16570OsAffx.7614.1.S1_at11/1112+9484135..9484526hypothetical protein
LOC_Os12g16580NANA12+9486006..9487648transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16590Os.52242.1.S1_at1/1112+9490817..9494174transposon protein, putative, Mariner sub-class
LOC_Os12g16600OsAffx.31660.1.S1_at9/1112+9494762..9496571hypothetical protein
LOC_Os12g16600OsAffx.31660.2.S1_x_at3/1112+9494762..9496571hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52308.1.S1_at--403--8651Chr12:9475308..9475332 (25 bp)
TGGGCCGTGGCGTCTGTTCACAAGC
LOC_Os12g16540
Os.52308.1.S1_at--731--5411Chr12:9475235..9475259 (25 bp)
GAAGCGAGTGCCGTAGCAGCAACAG
LOC_Os12g16540
Os.52308.1.S1_at--178--6991Chr12:9475186..9475210 (25 bp)
GTACCGCAGCGGTTACGTGTGCAAG
LOC_Os12g16540
Os.52308.1.S1_at--102--251Chr12:9474484..9474508 (25 bp)
ATATCGACGAATGTTCGCTGCCGGG
LOC_Os12g16540
Os.52308.1.S1_at--1106--5171Chr12:9474460..9474484 (25 bp)
GCAAGTGCTTCGGTGAGTGTACAAA
LOC_Os12g16540
Os.52308.1.S1_at--925--8151Chr12:9474428..9474452 (25 bp)
GGAAACTACAGTTGCCGTTGTCCGC
LOC_Os12g16540
Os.52308.1.S1_at--587--7531Chr12:9474394..9474418 (25 bp)
GTGGCAATCCCTACACCAAAGATGG
LOC_Os12g16540
Os.52308.1.S1_at--978--9051Chr12:9474371..9474392 (22 bp)
TGCATCAAGTTTCCTCTAGGTCCGG
LOC_Os12g16540
Os.52308.1.S1_at--574--7471Chr12:9473967..9473991 (25 bp)
GTGTGAGTCCGAATGGTCCTTTCTC
LOC_Os12g16540
Os.52308.1.S1_at--516--7631Chr12:9473901..9473925 (25 bp)
GGGACGGCATCACGTTGAACCGCAA
LOC_Os12g16540
Os.52308.1.S1_at--431--5431Chr12:9473885..9473909 (25 bp)
GAACCGCAACGCTAGTGATGCTGGC
LOC_Os12g16540
Target Sequence 
TGGGCCGTGGCGTCTGTTCACAAGCCGCCCACTCCCGTAGACGTGAACAGCACGTGCCCCAAGGACCCGGCGAGAAGCGA
GTGCCGTAGCAGCAACAGCTTCTGCCGCAACATCGCCAACATGTACCGCAGCGGTTACGTGTGCAAGTGCGACGACGGGT
ACCAGGGCAACCCTTACCTCACCGGCGGCTGCCAAGATATCGACGAATGTTCGCTGCCGGGCAAGTGCTTCGGTGAGTGT
ACAAACACGCCAGGAAACTACAGTTGCCGTTGTCCGCGTGGTGCGCGTGGCAATCCCTACACCAAAGATGGCTGCATCAA
GTTTCCTCTAGGTCCGGGTCTACAGAGAAAATGGATTGGTGCGGGTTGGATTTGCTTTGGTGTGAGTCCGAATGGTCCTT
TCTCTCGTCTTCTTGGCATGTTGATGAGAAACCAACGTGGTGGGAGGGACGGCATCACGTTGAACCGCAACGCTAGTGAT
GCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis