Browse Element(s) Details


OsAffx.7612.1.S1_at

Description tigr:9640.m01615
TID=OsAffx.7612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1651011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16470NANA12+9432404..9432751hypothetical protein
LOC_Os12g16480OsAffx.7611.1.S1_at10/1112+9433343..9435606hypothetical protein
LOC_Os12g16490OsAffx.30515.2.S1_x_at10/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.1.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16490OsAffx.30515.4.S1_x_at3/1112+9436208..9441368hAT family dimerisation domain containing protein, expressed
LOC_Os12g16500Os.35344.18.S1_x_at10/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500Os.35344.3.S1_x_at9/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16500OsAffx.22940.5.S1_x_at3/1112+9442970..9449167transposon protein, putative, Mutator sub-class
LOC_Os12g16510OsAffx.7612.1.S1_at11/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.55820.1.S1_at9/1112+9451263..9454464hypothetical protein
LOC_Os12g16510Os.32925.1.S1_at1/1112+9451263..9454464hypothetical protein
LOC_Os12g16520Os.54238.1.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16520OsAffx.18050.2.S1_at1/1112+9461364..9464036wall-associated kinase-like 1, putative, expressed
LOC_Os12g16530OsAffx.19704.1.S1_at11/1112+9471444..9471847hypothetical protein
LOC_Os12g16540Os.52308.1.S1_at11/1112+9473783..9476226wall-associated kinase-like 1, putative, expressed
LOC_Os12g16550OsAffx.7613.1.S1_at11/1112+9477854..9478101hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7612.1.S1_at--652--9291Chr12:9453462..9453486 (25 bp)
TCCCTTCTCTTGCAGGAGTTACGGG
LOC_Os12g16510
OsAffx.7612.1.S1_at--224--931Chr12:9453475..9453499 (25 bp)
AGGAGTTACGGGAGTGCCAGCACCT
LOC_Os12g16510
OsAffx.7612.1.S1_at--52--10471Chr12:9453480..9453504 (25 bp)
TTACGGGAGTGCCAGCACCTGGATT
LOC_Os12g16510
OsAffx.7612.1.S1_at--666--6111Chr12:9453486..9453510 (25 bp)
GAGTGCCAGCACCTGGATTCCACTA
LOC_Os12g16510
OsAffx.7612.1.S1_at--736--8571Chr12:9453499..9453523 (25 bp)
TGGATTCCACTACCGTTGCTGCCTC
LOC_Os12g16510
OsAffx.7612.1.S1_at--743--1771Chr12:9453534..9453558 (25 bp)
ACCGGCAGCGGAAGTCCGGACATCG
LOC_Os12g16510
OsAffx.7612.1.S1_at--421--4691Chr12:9453541..9453565 (25 bp)
GCGGAAGTCCGGACATCGAGGGCAT
LOC_Os12g16510
OsAffx.7612.1.S1_at--1161--10071Chr12:9453619..9453643 (25 bp)
TAGGTGACGGTGACACCGGGCAGAA
LOC_Os12g16510
OsAffx.7612.1.S1_at--161--7211Chr12:9453662..9453686 (25 bp)
GTCGTCGTTGCCATCCGGCGTGCAG
LOC_Os12g16510
OsAffx.7612.1.S1_at--259--8311Chr12:9453728..9453752 (25 bp)
GGCGCCTAGAAGAACGGGACGGAGT
LOC_Os12g16510
OsAffx.7612.1.S1_at--654--4971Chr12:9453756..9453780 (25 bp)
GCATCGGCGGGCAGAGTCGCAGAGA
LOC_Os12g16510
Target Sequence 
TCCCTTCTCTTGCAGGAGTTACGGGAGTGCCAGCACCTGGATTCCACTACCGTTGCTGCCTCCGCCTCCGCCACCGGCAG
CGGAAGTCCGGACATCGAGGGCATGGCGCAGGCCGACTTCTTCTTCGGCCCCGAGTTGGATGACTTGATGCAGCAGCTAG
GTGACGGTGACACCGGGCAGAAGGGCATGCTGCCAGCCTCGTCGTCGTTGCCATCCGGCGTGCAGCGGCGCAAAGCCGGC
GGGGCGGGGCGGAGCGGGCGGATGGCGGCGCCTAGAAGAACGGGACGGAGTGGGGCATCGGCGGGCAGAGTCGCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis