Browse Element(s) Details


Os.52363.1.S1_x_at

Description gb:AK066660.1
DB_XREF= gi:32976678
TID=Os.52363.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072E16, full insert sequence.
FL= gb:AK066660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g303706/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30310Os.45976.1.S1_x_at2/118+18526936..18527873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30320NANA8+18528360..18529601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30330NANA8+18532717..18537091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30340Os.35288.1.S1_at11/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.23126.1.S1_at3/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.22776.2.S1_at2/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.38043.1.S1_x_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.532.1.S1_s_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30350NANA8+18547307..18548754hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_x_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_x_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30370OsAffx.17239.1.S1_at11/118+18551523..18553336hypothetical protein
LOC_Os08g30370Os.52363.1.S1_x_at6/118+18551523..18553336hypothetical protein
LOC_Os08g30380OsAffx.29433.1.S1_at11/118+18560460..18561182hypothetical protein
LOC_Os08g30390NANA8+18562307..18562808NA
LOC_Os08g30400NANA8+18565111..18569450Transposable element protein, putative, Retrotrans_gag
LOC_Os08g30410OsAffx.29434.1.S1_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.29434.1.S1_x_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.15821.2.S1_at1/118+18574343..18574756hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52363.1.S1_x_at--383--9511Chr08:18553615..18553639 (25 bp)
TCTCTTTCTCCACCGATCGAATCGG
NONE
Os.52363.1.S1_x_at--298--10291Chr08:18553611..18553635 (25 bp)
TTTCTCCACCGATCGAATCGGCTCT
NONE
Os.52363.1.S1_x_at--969--9511Chr08:18553579..18553603 (25 bp)
TCTCTCCCTCAGCTGAATCGGCGTG
NONE
Os.52363.1.S1_x_at--653--4291Chr08:18553573..18553597 (25 bp)
CCTCAGCTGAATCGGCGTGCACGGT
NONE
Os.52363.1.S1_x_at--19--6491Chr08:18553495..18553519 (25 bp)
GATACTGTGGCCCAGCGGCGGCGCC
NONE
Os.52363.1.S1_x_at--1008--5291Chr08:18553165..18553189 (25 bp)
GAAGGCAATATGATGAGTGTTCTTG
LOC_Os08g30370
Os.52363.1.S1_x_at--520--1111Chr08:18553150..18553174 (25 bp)
AGTGTTCTTGATTCTCGATGAGTGT
LOC_Os08g30370
Os.52363.1.S1_x_at--982--91Chr08:18553140..18553164 (25 bp)
ATTCTCGATGAGTGTTCTGGATGAA
LOC_Os08g30370
Os.52363.1.S1_x_at--396--6111Chr08:18553131..18553155 (25 bp)
GAGTGTTCTGGATGAATGTGTTTGA
LOC_Os08g30370
Os.52363.1.S1_x_at--1146--9571Chr08:18553089..18553113 (25 bp)
TCTTGATGAGTGTTTTTAATGAATG
LOC_Os08g30370
Os.52363.1.S1_x_at--842--6291Chr08:18553063..18553087 (25 bp)
GATGATGTTGACGAGTGTTCTTGAT
LOC_Os08g30370
Target Sequence 
TCTCTTTCTCCACCGATCGAATCGGCTCTCTCTCTCTCTCTCCCTCAGCTGAATCGGCGTGCACGGTGGGAGGGGATGCT
GCGGCGGCGGTGGGTCGGCGGCCGGTCGGTGGTGGGAGGGGATACTGTGGCCCAGCGGCGGCGCCCTCCCCTCCGCCAGA
TCTGGTGGGAGGGGAGGTGGCGTCGGCGGCGCGACGGCAAAAGGGGGTGCGGCGGCGACAGGTCGGCGGCGTGAGGGGAG
GCGACGGCGGTCCGACGGCCCGGCGGCGGGTCCCTCCCCTCCACCAGATCTAGCGGGAGGGAGATGGCGGTGGCGGCCCG
GCGGCAGAAGGGGATACGGCAGCGGCGGCCCGGCGACAGCGACAGCGGTGCTGCGGCAGCGGCGCCCTCCTCTCCATCCG
ATGACGGTGGCAGCGGTGGAGACGTTAGTGGCGGTAGTGGCGGTGGTGGTGAAGGCAATATGATGAGTGTTCTTGATTCT
CGATGAGTGTTCTGGATGAATGTGTTTGAATATGATGTTGATGTGTTCTTGATGAGTGTTTTTAATGAATGTGATGATGT
TGACGAGTGTTCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52363.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis