Browse Element(s) Details


Os.52376.1.S1_at

Description gb:AK066721.1
DB_XREF= gi:32976739
TID=Os.52376.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013083G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083G18, full insert sequence.
FL= gb:AK066721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0513011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52376.1.S1_at--819--9591Chr11:2244214..2244238 (25 bp)
TCATTGCTCGCCTTGGGAGGATGGT
LOC_Os11g05130
Os.52376.1.S1_at--1092--5911Chr11:2244131..2244155 (25 bp)
GAGCTTCAAACTTTCATTGCACTTG
LOC_Os11g05130
Os.52376.1.S1_at--474--3591Chr11:2244117..2244141 (25 bp)
CATTGCACTTGTTACCTGAGAGCTG
LOC_Os11g05130
Os.52376.1.S1_at--862--191Chr11:2243920..2243944 (25 bp)
ATTTCCCTTCTAGCTATTTGGCATT
LOC_Os11g05130
Os.52376.1.S1_at--889--7271Chr11:2243891..2243915 (25 bp)
GTGCCACTGACCGTTTGGGAGTTGT
LOC_Os11g05130
Os.52376.1.S1_at--987--8471Chr11:2243867..2243891 (25 bp)
TGGCGTTGATTACTGGACACACCTT
LOC_Os11g05130
Os.52376.1.S1_at--584--2412Chr04:8324207..8324227 (21 bp)
AAAAAGCCGTTTTCCATTCATCTAG
NONE
Os.52376.1.S1_at--901--9591Chr11:2243761..2243785 (25 bp)
TCATCTAGGCGGTTTTCTTTTTAAG
LOC_Os11g05130
Os.52376.1.S1_at--283--971Chr11:2243693..2243717 (25 bp)
AGGAGCTCTGGACTTTGGAAGCCAT
LOC_Os11g05130
Os.52376.1.S1_at--525--5411Chr11:2243676..2243700 (25 bp)
GAAGCCATGTTCCTGACAATGTGTT
LOC_Os11g05130
Os.52376.1.S1_at--1079--2851Chr11:2243606..2243630 (25 bp)
AAGTGCCTCTTTCTCCGAGTGGATG
LOC_Os11g05130
Target Sequence 
TCATTGCTCGCCTTGGGAGGATGGTGAACAGCCATCAGATAGTGCCGATTGGAGTTGTGGTGCCTGCCGGGAGTGGCGAT
GATGAGCTTCAAACTTTCATTGCACTTGTTACCTGAGAGCTGCATAGAGCAGCTGTCTAATTACAGTCGAAGNNNNNNNN
NNNNAAGAAATCTCATGAAGCACACCAAGGAGGAGCGAGGGAAAATTTCCCTTCTAGCTATTTGGCATTGTCAGTGCCAC
TGACCGTTTGGGAGTTGTGGCGTTGATTACTGGACACACCTTAGCAATATGGTTTGACAACCAAGGTTTTCGGCGAACTG
TACATATATTAATGAATGGTTGATCGAAAAAGCCGTTTTCCATTCATCTAGGCGGTTTTCTTTTTAAGGGGAGGATTATA
GGATTAGATTGCTCTTAGTTACGTGTTATATAGGAGCTCTGGACTTTGGAAGCCATGTTCCTGACAATGTGTTGTCTTGG
NATTCTTTTGCCCCTTTTTTTCCCTCAGAAAAAGAATAGAAGTGCCTCTTTCTCCGAGTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis