Browse Element(s) Details


Os.52392.1.S1_at

Description gb:AK066817.1
DB_XREF= gi:32976835
TID=Os.52392.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013081A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013081A11, full insert sequence.
FL= gb:AK066817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3102011/11expressed protein
LOC_Os03g451941/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein
LOC_Os04g31010Os.17392.1.S1_at11/114+18347743..18351190Ycf49, putative, expressed
LOC_Os04g31020Os.50412.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020Os.52392.1.S1_at11/114+18350970..18356299expressed protein
LOC_Os04g31020OsAffx.3963.1.S1_at9/114+18350970..18356299expressed protein
LOC_Os04g31020Os.17052.1.S1_s_at3/114+18350970..18356299expressed protein
LOC_Os04g31030Os.15175.1.S1_at10/114+18359891..18363589Nitrate-induced NOI protein, expressed
LOC_Os04g31040Os.2467.1.S1_at11/114+18363856..18366414violaxanthin de-epoxidase, putative, expressed
LOC_Os04g31050Os.51850.1.S1_at11/114+18367073..18371944expressed protein
LOC_Os04g31070Os.2674.1.S1_at11/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os04g31070Os.57486.1.S1_x_at9/114+18372798..18376990Acyl-desaturase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52392.1.S1_at--961--1311Chr04:18354505..18354529 (25 bp)
AGAGGTGCAAATCGTTTAATTCTTT
LOC_Os04g31020
Os.52392.1.S1_at--921--9011Chr04:18354534..18354558 (25 bp)
TGCAAGAATCTTTACTGTACAGAGT
LOC_Os04g31020
Os.52392.1.S1_at--1051--9531Chr04:18354542..18354566 (25 bp)
TCTTTACTGTACAGAGTTTCTCTTT
LOC_Os04g31020
Os.52392.1.S1_at--902--4552Chr04:18354626..18354650 (25 bp)
GCGCCTTTGCAGATGGTAGAGACCA
LOC_Os04g31020
Os.52392.1.S1_at--749--9511Chr04:18354654..18354678 (25 bp)
TCTCTGTGGACTATTTGCAGGCAGA
LOC_Os04g31020
Os.52392.1.S1_at--107--1312Chr09:16073105..16073128 (24 bp)
AGATGACTGCTCAAGTAATTGATCA
NONE
Os.52392.1.S1_at--725--8831Chr04:18355205..18355229 (25 bp)
TGATCAAGACCTTGGTTTTTGTTCC
LOC_Os04g31020
Os.52392.1.S1_at--1028--4411Chr04:18355233..18355257 (25 bp)
GCCTGGTTAGGATTCCGCATTGGGT
LOC_Os04g31020
Os.52392.1.S1_at--783--5531Chr04:18355316..18355340 (25 bp)
GAAACACCGTGAGGTATGCGGTGAT
LOC_Os04g31020
Os.52392.1.S1_at--408--611Chr04:18355331..18355355 (25 bp)
ATGCGGTGATTGTAGTTCATGTAAC
LOC_Os04g31020
Os.52392.1.S1_at--492--6731Chr04:18355345..18355369 (25 bp)
GTTCATGTAACTGGGATTGTCTGCC
LOC_Os04g31020
Target Sequence 
AGAGGTGCAAATCGTTTAATTCTTTGTTTTGCAAGAATCTTTACTGTACAGAGTTTCTCTTTCTGNTGTTATCAGNGGTG
NGTGGCACATGACATATTTATGGCAACTTAACATCGATGCTGCGCCTTTGCAGATGGTAGAGACCAGTTTCTCTGTGGAC
TATTTGCAGGCAGAATGAAAAATGTGTGATACAGATGATGGAGAAGGAGCTGATGAGTGAAATCAAGGTCATGGATATGG
TATGGAACTGCAAGTTTTTTGGAACACCGTTGTTGTTCATGGACATAATGGTCATAGATGACTGCTCAAGTAATTGATCA
AGACCTTGGTTTTTGTTCCCCCGCCTGGTTAGGATTCCGCATTGGGTGCTTGCCAGGGAATTTGATTTTGACATGCTTTT
CTCAAGGTGCATTTGTTGATCCAAGGAAACACCGTGAGGTATGCGGTGATTGTAGTTCATGTAACTGGGATTGTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis