Browse Element(s) Details


Os.52455.1.S1_at

Description gb:AK067212.1
DB_XREF= gi:32977230
TID=Os.52455.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096H13, full insert sequence.
FL= gb:AK067212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g340101/11expressed protein
LOC_Os12g160101/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33970OsAffx.20497.1.S1_at3/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.21754.1.S1_x_at2/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.22387.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.3348.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.31287.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.9949.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33980NANA1+19029112..19029333hypothetical protein
LOC_Os01g33990OsAffx.23502.2.S1_at6/111+19030303..19033308transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34000OsAffx.21172.1.S1_at10/111+19037627..19038616hypothetical protein
LOC_Os01g34010Os.36245.2.S1_at10/111+19046792..19049950expressed protein
LOC_Os01g34010Os.52455.1.S1_at1/111+19046792..19049950expressed protein
LOC_Os01g34020NANA1+19054772..19054993transposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.3.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.2.S1_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52455.1.S1_at--311--9111Chr12:7241058..7241082 (25 bp)
TGCTGCGCCATGGTTCGATGCCGTG
NONE
Os.52455.1.S1_at--512--3931Chr12:7241030..7241054 (25 bp)
CGGCGTGTCTCTGATCCGAGGATGC
NONE
Os.52455.1.S1_at--807--5072Chr12:7241016..7241040 (25 bp)
TCCGAGGATGCCGAGAAACCCCAAT
NONE
Os.52455.1.S1_at--34--5951Chr12:7241004..7241028 (25 bp)
GAGAAACCCCAATCGGCTAGACGCC
NONE
Os.52455.1.S1_at--288--10311Chr12:7240953..7240977 (25 bp)
TTTCGTCGGGAGTCACAAAAACAGA
NONE
Os.52455.1.S1_at--724--8191Chr12:7240924..7240948 (25 bp)
GGAAGATGCAAGGATTTCATTTTTG
NONE
Os.52455.1.S1_at--1112--2311Chr12:7240878..7240902 (25 bp)
AAGAGGATTCTTGAGTTCTTACCCT
NONE
Os.52455.1.S1_at--612--1213Chr12:3908687..3908765 (25 bp)
AGTTCTTACCCTCCTGCTACACGAA
NONE
Os.52455.1.S1_at--769--7713Chr12:7245234..7245258 (25 bp)
GGGTGAGACTCTCTTTCACTATTCA
NONE
Os.52455.1.S1_at--601--3773Chr12:7240781..7240805 (25 bp)
CTCTCTTTCACTATTCAATCATCCA
NONE
Os.52455.1.S1_at--756--4294Chr12:22223508..22223532 (25 bp)
CCTCTCTTTATATAGTGCAATCTAA
NONE
Target Sequence 
TGCTGCGCCATGGTTCGATGCCGTGCGGCGGCGTGTCTCTGATCCGAGGATGCCGAGAAACCCCAATCGGCTAGACGCCG
GCGACTCCAAGTCAGCGATGGCGGTTTTCGTCGGGAGTCACAAAAACAGAACGAGGAAGATGCAAGGATTTCATTTTTGC
AATTCAATCTATAAGATGCAAAGAGGATTCTTGAGTTCTTACCCTCCTGCTACACGAAGTAATCCAAGAGGGTCCCGTAA
TTATATAAAAGTAGAGACACAAAGTTTAGGGGTGAGACTCTCTTTCACTATTCAATCATCCAATCAACTGTATAATGAGT
AGCCCCCTCCTCTCTTTATATAGTGCAATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis