Browse Element(s) Details


Os.52507.1.S1_at

Description gb:AK067570.1
DB_XREF= gi:32977588
TID=Os.52507.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110L15, full insert sequence.
FL= gb:AK067570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4312011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein
LOC_Os01g43120Os.26991.1.S1_x_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.52507.1.S1_at11/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43120Os.26517.1.S1_at1/111+24925029..24928701DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43130Os.47953.1.S1_at11/111+24929073..24932332DEAD/DEAH box helicase family protein, expressed
LOC_Os01g43140Os.41251.1.A1_at6/111+24938537..24942334Lipase family protein, expressed
LOC_Os01g43150Os.51057.1.S1_s_at11/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g43150Os.51057.1.S1_at10/111+24942951..24950000ATP-dependent metalloprotease FtsH family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52507.1.S1_at--878--6031Chr01:24928174..24928198 (25 bp)
GAGATCTACATAACCCTGATGCCTG
LOC_Os01g43120
Os.52507.1.S1_at--882--131Chr01:24928201..24928225 (25 bp)
ATTAAGGTCCTTGTGCACTTTGTGC
LOC_Os01g43120
Os.52507.1.S1_at--757--1631Chr01:24928230..24928254 (25 bp)
AGCGTAGAGCACACTATCGACATTT
LOC_Os01g43120
Os.52507.1.S1_at--788--4811Chr01:24928268..24928292 (25 bp)
GCTCTCTGCTGCGTTTATGGTAAAC
LOC_Os01g43120
Os.52507.1.S1_at--543--9691Chr01:24928310..24928334 (25 bp)
TCACTGCTGCAGATATTTGAGCTTT
LOC_Os01g43120
Os.52507.1.S1_at--881--3671Chr01:24928331..24928355 (25 bp)
CTTTGCAGCTCGGTGGGTTGATATT
LOC_Os01g43120
Os.52507.1.S1_at--518--6871Chr01:24928364..24928388 (25 bp)
GTTTGGACGATCAACACTATGTATG
LOC_Os01g43120
Os.52507.1.S1_at--1112--8831Chr01:24928387..24928411 (25 bp)
TGATCACAGATCACTTCTCTCGGAG
LOC_Os01g43120
Os.52507.1.S1_at--577--10571Chr01:24928401..24928425 (25 bp)
TTCTCTCGGAGGTTCAGGAGTTCTA
LOC_Os01g43120
Os.52507.1.S1_at--1043--6091Chr01:24928451..24928475 (25 bp)
GAGTCTTTCTGGTCCTCTACAAATA
LOC_Os01g43120
Os.52507.1.S1_at--289--10471Chr01:24928542..24928566 (25 bp)
TTACCTTGTTCTGATCCATTTTGAG
LOC_Os01g43120
Target Sequence 
GAGATCTACATAACCCTGATGCCTGAAATTAAGGTCCTTGTGCACTTTGTGCTAAAAGCGTAGAGCACACTATCGACATT
TGATCCATCACTGTGCTCTCTGCTGCGTTTATGGTAAACTTCAGGCGTGATNTACCTCACTGCTGCAGATATTTGAGCTT
TGCAGCTCGGTGGGTTGATATTGGTCAGAAGTTTGGACGATCAACACTATGTATGATCACAGATCACTTCTCTCGGAGGT
TCAGGAGTTCTAAGTTCAACTATTCAAGCATGACTAGGAGTCTTTCTGGTCCTCTACAAATACAGGTTCAAAAANAGACA
GTGATTCTACAGAAGCTCATATAGTGCAACACACGAAGATTTTTATTTTTACCTTGTTCTGATCCATTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis