Browse Element(s) Details


Os.5253.1.S1_at

Description gb:AK121253.1
DB_XREF= gi:37990876
TID=Os.5253.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101O11, full insert sequence.
FL= gb:AK121253.1 gb:AK065270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g349508/11ATP-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5253.1.S1_at--143--8551Chr02:20959008..20959032 (25 bp)
TGGAGCTGCCACACATCAATGTTTT
LOC_Os02g34950
Os.5253.1.S1_at--788--9711Chr02:20958870..20958894 (25 bp)
TCAACCTCAACTTCTACACTGATGT
LOC_Os02g34950
Os.5253.1.S1_at--93--2191Chr02:20958855..20958879 (25 bp)
ACACTGATGTCGAGGATCTGTCTTA
LOC_Os02g34950
Os.5253.1.S1_at--55--7151Chr02:20958836..20958860 (25 bp)
GTCTTATTTGCAACGCCATCTAGAT
LOC_Os02g34950
Os.5253.1.S1_at--113--10051Chr02:20958816..20958840 (25 bp)
TAGATCAAGATCCTCGTTCTGCCAA
LOC_Os02g34950
Os.5253.1.S1_at--47--5571Chr02:20958071..20958095 (25 bp)
GAAAGCGTCGGCAATCTTGTGAAAT
LOC_Os02g34950
Os.5253.1.S1_at--927--5631Chr02:20958008..20958032 (25 bp)
GACAGCAGTGTCGTTGAGTTCAGTA
LOC_Os02g34950
Os.5253.1.S1_at--588--1491Chr02:20957976..20958000 (25 bp)
AGCAGCGCCACTTGACTGGGATTAC
LOC_Os02g34950
Os.5253.1.S1_at--187--5671Chr02:20957421..20957445 (25 bp)
GACATGTGACCTTGCTATGCTTGAA
NONE
Os.5253.1.S1_at--1081--3611Chr02:20957402..20957426 (25 bp)
CTTGAATGAGAGCTCCATTTGCCCC
NONE
Os.5253.1.S1_at--803--591Chr02:20957376..20957400 (25 bp)
ATGCCGCTCAGGTAGGGATGTAACA
NONE
Target Sequence 
TGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCATTGAGAACTATGGAAACTTAGCATTCAACCTCAACTTC
TACACTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTAC
TAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCG
GCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAA
ATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGT
GCAGAAGACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGC
TCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis