Browse Element(s) Details


Os.52534.1.S1_x_at

Description gb:AK067773.1
DB_XREF= gi:32977791
TID=Os.52534.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K04, full insert sequence.
FL= gb:AK067773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g409105/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein
LOC_Os04g40880Os.373.1.S1_s_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40880Os.56121.1.S1_x_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40890OsAffx.29207.2.S1_at11/114+24053443..24053817hypothetical protein
LOC_Os04g40890OsAffx.29207.1.S1_x_at3/114+24053443..24053817hypothetical protein
LOC_Os04g40900Os.27605.1.S1_at5/114+24057495..24059304expressed protein
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52534.1.S1_x_at--100--3811Chr08:8294555..8294579 (25 bp)
CTCCTGATATTGAGATGTGCCCTAT
NONE
Os.52534.1.S1_x_at--205--6272Chr08:8294542..8294566 (25 bp)
GATGTGCCCTATTTGTCAGAACTAC
NONE
Os.52534.1.S1_x_at--507--2071Chr08:8294515..8294539 (25 bp)
ACTTGTTTATGATTGCCGAGATGAA
NONE
Os.52534.1.S1_x_at--179--6272Chr01:33212474..33212503 (23 bp)
GATGTGATGATAGAGGCCGAGTTTA
NONE
Os.52534.1.S1_x_at--582--9731Chr08:8294312..8294336 (25 bp)
TCAAGGGTTGTGCTGTTTGCATACT
NONE
Os.52534.1.S1_x_at--713--6612Chr08:8294254..8294278 (25 bp)
GTTGGCATTCAAGGAGTCATTTTCT
NONE
Os.52534.1.S1_x_at--572--3892Chr08:8294224..8294248 (25 bp)
CTGGGTTTGCCCTAATTGTCAAGAG
NONE
Os.52534.1.S1_x_at--505--5192Chr08:8294120..8294144 (25 bp)
GCAATGCTGTCATGCAAGCCATCTT
NONE
Os.52534.1.S1_x_at--771--2651Chr08:8294105..8294129 (25 bp)
AAGCCATCTTAACGTATCATTTCTA
NONE
Os.52534.1.S1_x_at--1079--8772Chr08:8294049..8294073 (25 bp)
TGTTATTCTTGAAGGCGCAGCCATC
NONE
Os.52534.1.S1_x_at--359--5671Chr08:8294022..8294046 (25 bp)
GACATGCTGCATTAGCTTCTTGCAA
NONE
Target Sequence 
CTCCTGATATTGAGATGTGCCCTATTTGTCAGAACTACAAACTTGTTTATGATTGCCGAGATGAAGGATGTGATGATAGA
GGCCGAGTTTAGTTCCAAATTTTTTCTTCAAACTTTCAACTTTTCTATCACATCAAAACTTTCCTACACACACAAACTTC
CAACTTTTCCGTTACATCGTTCCATTTTCAACCAAACTTCTAATTTTAGCGTGAACTAAACACACCCAAAAGATCAGGTA
ATTTCAAGGGTTGTGCTGTTTGCATACTGAGATGTTATGAGTGTGGAAGGTGTGTAGACAAGTTGGCATTCAAGGAGTCA
TTTTCTTTGGACTGGGTTTGCCCTAATTGTCAAGAGAAGAAGGATCTGTCTCCCCCAATGAAATAGGGGTTTGTCCCCCA
ACGAACACTCTTCCTCTGCTAACAGAGAACAGCGTGCAATGCTGTCATGCAAGCCATCTTAACGTATCATTTCTACTGAG
AAAACAGACAAAAAAAACGATGAGTTTGTTATTCTTGAAGGCGCAGCCATCCTGACATGCTGCATTAGCTTCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52534.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis