Browse Element(s) Details


Os.52568.1.S1_s_at

Description gb:AK068049.1
DB_XREF= gi:32978067
TID=Os.52568.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134H19, full insert sequence.
FL= gb:AK068049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0280011/11expressed protein
LOC_Os11g0282011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02730Os.17056.1.A1_at11/1112+965058..968456expressed protein
LOC_Os12g02730Os.40337.1.S1_s_at5/1112+965058..968456expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_s_at11/1112+970331..974926expressed protein
LOC_Os12g02750Os.53770.1.S1_at10/1112+970331..974926expressed protein
LOC_Os12g02750OsAffx.7464.1.S1_at8/1112+970331..974926expressed protein
LOC_Os12g02760Os.54328.1.S1_at11/1112+974104..976096expressed protein
LOC_Os12g02770NANA12+977181..977828retrotransposon protein, putative, unclassified
LOC_Os12g02780NANA12+979692..981314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g02790NANA12+985410..986157expressed protein
LOC_Os12g02800Os.52568.1.S1_s_at11/1112+987599..988874expressed protein
LOC_Os12g02800Os.52568.1.S1_at11/1112+987599..988874expressed protein
LOC_Os12g02810Os.12636.1.S1_at11/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810OsAffx.18642.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02810Os.54274.1.S1_at1/1112+990532..994961Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os12g02820Os.38774.1.S1_s_at11/1112+1004448..1010142Cytidylyltransferase family protein, expressed
LOC_Os12g02830Os.34563.1.S1_at4/1112+1011301..1015757SNF7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52568.1.S1_s_at--117--5852Chr12:988269..988293 (25 bp)
GACCATGGCAAAAGATCCTCATGTC
LOC_Os12g02800
Os.52568.1.S1_s_at--1079--5132Chr12:988262..988286 (25 bp)
GCAAAAGATCCTCATGTCTCCATCT
LOC_Os12g02800
Os.52568.1.S1_s_at--411--672Chr12:988057..988081 (25 bp)
ATGAAGTACGACGTGCCGGTGAAGA
LOC_Os12g02800
Os.52568.1.S1_s_at--190--4652Chr12:987976..988000 (25 bp)
GCGTACGAGCCGTTCGAGCTGTGCA
LOC_Os12g02800
Os.52568.1.S1_s_at--321--9952Chr12:987973..987997 (25 bp)
TACGAGCCGTTCGAGCTGTGCATGG
LOC_Os12g02800
Os.52568.1.S1_s_at--1068--9352Chr12:987928..987952 (25 bp)
TCGAACGCGAGCAGCTGCGTGGACA
LOC_Os12g02800
Os.52568.1.S1_s_at--784--1752Chr12:987778..987802 (25 bp)
ACCTCTTGCTGCTGCTAATTCAATT
LOC_Os12g02800
Os.52568.1.S1_s_at--196--3152Chr12:987762..987786 (25 bp)
AATTCAATTCGATCTCTTCCATGAT
LOC_Os12g02800
Os.52568.1.S1_s_at--730--92Chr12:987756..987780 (25 bp)
ATTCGATCTCTTCCATGATCAATAT
LOC_Os12g02800
Os.52568.1.S1_s_at--451--6352Chr12:987699..987723 (25 bp)
GATGCGATTGCAAACGTATTAAGTT
LOC_Os12g02800
Os.52568.1.S1_s_at--33--6832Chr12:987620..987644 (25 bp)
GTTTAACTGCATATAGAATCTTCAG
LOC_Os12g02800
Target Sequence 
GACCATGGCAAAAGATCCTCATGTCTCCATCTNTCNNNNNGNNNNNNNNNNNNNCNTCNNNNNNNTNNTNANNTCNNNNT
TNNTNNNNNNNNNNNNAGGATCAGACAAGAAGATGGCAATGAAGTACGACGTGCCGGTGAAGAGGCTGGTGTACCGGCCG
TCGGCGATGCAGGCGGCGGTGATCGGCACGGAGGCGGCGGCGTACGAGCCGTTCGAGCTGTGCATGGGCTGCCGGTGCTG
CGCGTCGTCGAACGCGAGCAGCTGCGTGGACACGAGATGCTGCTACGCCATCGACTGCAACATCCCCGGCAAGCCCTTCG
GCGTCTGCGCCTTCTCTCCCCACACCTGCGACTGTGGTGCCACCAACTGCACCAGCCAACAGCAGCCATGACCACACACC
TCTTGCTGCTGCTAATTCAATTCGATCTCTTCCATGATCAATATACTTATGCGCCTGAATCATTCAACTGTTTTCTGATG
CGATTGCAAACGTATTAAGTTTTTTCAGAGATTCTTGGGACTTAGATATCCTGACATGAGCATGTTGATCTGAAAGTTTA
ACTGCATATAGAATCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52568.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis