Browse Element(s) Details


Os.52569.1.S1_at

Description gb:AK068055.1
DB_XREF= gi:32978073
TID=Os.52569.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132E09, full insert sequence.
FL= gb:AK068055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4721011/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein
LOC_Os02g47240OsAffx.24762.1.S1_at11/112+28828065..28828475hypothetical protein
LOC_Os02g47250NANA2+28829205..28832269hypothetical protein
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52569.1.S1_at--544--8671Chr02:28810076..28810100 (25 bp)
TGAGGTTCTCCGTTAACCCGGATCT
LOC_Os02g47210
Os.52569.1.S1_at--1028--10851Chr02:28810005..28810029 (25 bp)
TTGGTTCCGTAGGACGCCCAGAAAT
LOC_Os02g47210
Os.52569.1.S1_at--37--3431Chr02:28809987..28810011 (25 bp)
CAGAAATCAGTTAGGCCCTGGAACT
LOC_Os02g47210
Os.52569.1.S1_at--1098--7911Chr02:28809946..28809970 (25 bp)
GGATTGCAGTCCAACTATAGGGAGA
LOC_Os02g47210
Os.52569.1.S1_at--543--5331Chr02:28809916..28809940 (25 bp)
GAAGTCCTGCAGAATCATGTATACG
LOC_Os02g47210
Os.52569.1.S1_at--175--2571Chr02:28809848..28809872 (25 bp)
AACGGAAGCACTATTCTGTTGGAAT
LOC_Os02g47210
Os.52569.1.S1_at--1076--311Chr02:28809818..28809842 (25 bp)
AGAAATTTTTCCATGAGTTCAAAGC
LOC_Os02g47210
Os.52569.1.S1_at--674--5731Chr02:28809772..28809796 (25 bp)
GACTGTGAGTTCAAACCTCGTCTTC
LOC_Os02g47210
Os.52569.1.S1_at--257--7151Chr02:28809753..28809777 (25 bp)
GTCTTCACATCTTATTGCTGCTCAT
LOC_Os02g47210
Os.52569.1.S1_at--1155--651Chr02:28809730..28809754 (25 bp)
ATGCAATCCCGTGCTTGTCATGTAT
LOC_Os02g47210
Os.52569.1.S1_at--804--851Chr02:28809676..28809700 (25 bp)
ATGGCACCTTAGTTACATGTGTTGT
LOC_Os02g47210
Target Sequence 
TGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCGCCGGACGAGCCGTTGGTTCCG
TAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAAATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATA
GAAGTCCTGCAGAATCATGTATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACTA
TTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAATGAAGACTGTGAGTTCAAACC
TCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGCTTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCA
TGGCACCTTAGTTACATGTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis