Browse Element(s) Details


Os.52590.1.S1_at

Description gb:AK068212.1
DB_XREF= gi:32978230
TID=Os.52590.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146D16, full insert sequence.
FL= gb:AK068212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4732011/11Vacuolar ATPase G subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47290OsAffx.24763.1.S1_at11/112+28869364..28870848hypothetical protein
LOC_Os02g47300OsAffx.2988.1.S1_at11/112+28881319..28881959hypothetical protein
LOC_Os02g47310Os.15731.1.S1_at11/112+28888196..28891679Tocopherol O-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os02g47320Os.52590.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320Os.4730.1.S1_at11/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47320OsAffx.24764.1.S1_at10/112+28892221..28894993Vacuolar ATPase G subunit family protein, expressed
LOC_Os02g47330NANA2+28895716..28896078expressed protein
LOC_Os02g47340OsAffx.29724.3.S1_x_at11/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.6.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.1.S1_x_at6/112+28897987..28903844hypothetical protein
LOC_Os02g47340OsAffx.29724.2.S1_x_at3/112+28897987..28903844hypothetical protein
LOC_Os02g47350Os.51095.1.A1_at9/112+28908875..28911021oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g47360OsAffx.24765.1.S1_at11/112+28911931..28914888LAGLIDADG DNA endonuclease family protein, expressed
LOC_Os02g47370Os.55550.1.S1_at10/112+28915307..28915923expressed protein
LOC_Os02g47380Os.17546.2.S1_x_at1/112+28917818..28921944retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015991biological_processATP hydrolysis coupled proton transport
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0016469cellular_componentproton-transporting two-sector ATPase complex
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52590.1.S1_at--1125--10392Chr03:12490928..12490947 (20 bp)
TTTTGTTGTTATCCTCGTTATTGTA
NONE
Os.52590.1.S1_at--934--8731Chr02:28894221..28894245 (25 bp)
TGTAACTGTTATCCGGTGCCAAATT
LOC_Os02g47320
Os.52590.1.S1_at--815--4391Chr02:28894204..28894228 (25 bp)
GCCAAATTAGCACCTGTTATTGTAA
LOC_Os02g47320
Os.52590.1.S1_at--253--9591Chr02:28894112..28894136 (25 bp)
TCTTGTGAATGCTCGAATTCTGGCA
LOC_Os02g47320
Os.52590.1.S1_at--668--8671Chr02:28894064..28894088 (25 bp)
TGTGTTCTGTTCATTTAGGACTTGT
LOC_Os02g47320
Os.52590.1.S1_at--51--2071Chr02:28894045..28894069 (25 bp)
ACTTGTTATATTCCACTCGGCTTTC
LOC_Os02g47320
Os.52590.1.S1_at--387--3331Chr02:28894032..28894056 (25 bp)
CACTCGGCTTTCACTATGTGTTATT
LOC_Os02g47320
Os.52590.1.S1_at--1008--4851Chr02:28893883..28893907 (25 bp)
GCTAGGAGCGGTAATTGTTCCACAA
LOC_Os02g47320
Os.52590.1.S1_at--507--5191Chr02:28893795..28893819 (25 bp)
GCAATGATTGCTTCGATATACCTAC
LOC_Os02g47320
Os.52590.1.S1_at--406--171Chr02:28893764..28893788 (25 bp)
ATTTTGCTCGTATATTTCTTTGTTG
LOC_Os02g47320
Os.52590.1.S1_at--266--5231Chr02:28893701..28893725 (25 bp)
GAATAAGTTCCATTGTACCAACATT
LOC_Os02g47320
Target Sequence 
TTTTGTTGTTATCCTCGTTATTGTAACTGTTATCCGGTGCCAAATTAGCACCTGTTATTGTAACTAAAAGTCAGTGGCTT
TTATTAGAAGATAACATCTTCCATTTTTTATTTATACCTCTTAAAATGTATCTTGTGAATGCTCGAATTCTGGCATATGT
TATGCAATCACATTCATTTGTGTTCTGTTCATTTAGGACTTGTTATATTCCACTCGGCTTTCACTATGTGTTATTTTGTC
TAATAATAAAATAGTTCCTCACACCATGTAGCAGAAGGAAGATGGATGCTAACAGACGCCAAGGTGGAATTCAGCAATTA
TTGGCTGCAGAGCAAGAAGCTCAACAGATTGTTAATGCTGCTAGGAGCGGTAATTGTTCCACAAATATTCATTAAGAATA
ACGCGGAAATTGATGGGGGGGAATTGCTTATGTTGTACGAAATATGTGCAATGATTGCTTCGATATACCTACAACAAGAT
TTTGCTCGTATATTTCTTTGTTGATGTCTTTATAGGGTAATTTTGAATCATCCTGTTTGTTGAATAAGTTCCATTGTACC
AACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis