Browse Element(s) Details


Os.5263.2.S1_x_at

Description gb:AK064775.1
DB_XREF= gi:32974793
TID=Os.5263.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A24, full insert sequence.
FL= gb:AK064775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0442411/11Strictosidine synthase family protein, expressed
LOC_Os11g046606/11Strictosidine synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04370OsAffx.31575.1.S1_x_at11/1112+1852598..1857136GRAS family transcription factor containing protein
LOC_Os12g04380OsAffx.19487.1.S1_x_at11/1112+1858794..1860188GRAS family transcription factor containing protein
LOC_Os12g04390OsAffx.31576.1.S1_at11/1112+1863322..1864544hypothetical protein
LOC_Os12g04400NANA12+1866002..1866811hypothetical protein
LOC_Os12g04410Os.49532.1.S1_s_at4/1112+1868475..1871099ankyrin repeat family protein, putative, expressed
LOC_Os12g04424Os.5263.2.S1_x_at11/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_x_at6/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04424Os.5263.1.S1_at5/1112+1881576..1887256Strictosidine synthase family protein, expressed
LOC_Os12g04440Os.11248.1.S1_at11/1112+1887941..18938702-isopropylmalate synthase B, putative, expressed
LOC_Os12g04450OsAffx.19490.2.S1_at11/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04450OsAffx.19490.1.S1_at2/1112+1895033..1897476Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04460OsAffx.18669.1.S1_at11/1112+1898902..1899588Zinc finger, C3HC4 type family protein
LOC_Os12g04470OsAffx.31577.1.S1_s_at11/1112+1900516..1901956hypothetical protein
LOC_Os12g04480Os.23206.1.S1_at10/1112+1905049..1908150Cytochrome P450 family protein, expressed
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5263.2.S1_x_at--56--7691Chr12:1886685..1886709 (25 bp)
GGGTTTCCAGACAACATCAAGATGA
LOC_Os12g04424
Os.5263.2.S1_x_at--1125--2071Chr12:1886698..1886722 (25 bp)
ACATCAAGATGAGTCCTAGAGGAGG
LOC_Os12g04424
Os.5263.2.S1_x_at--113--4952Chr12:1886821..1886845 (25 bp)
GCATTCAACGCATCACATCGTTCTT
LOC_Os12g04424
Os.5263.2.S1_x_at--148--5852Chr12:1886897..1886921 (25 bp)
GACCATAGAAGCAATGAGTGTTCAT
LOC_Os12g04424
Os.5263.2.S1_x_at--241--5352Chr12:1886933..1886957 (25 bp)
GAAGTTGTTCAAGTCTATTAGCGAA
LOC_Os12g04424
Os.5263.2.S1_x_at--801--7592Chr12:1886973..1886997 (25 bp)
GGGAACCTCTGGATAGGATCTGTTT
LOC_Os12g04424
Os.5263.2.S1_x_at--332--7972Chr12:1886988..1887012 (25 bp)
GGATCTGTTTTGTCACCTTTTCTTG
LOC_Os12g04424
Os.5263.2.S1_x_at--966--9652Chr12:1887000..1887024 (25 bp)
TCACCTTTTCTTGGGCTTTATCGTA
LOC_Os12g04424
Os.5263.2.S1_x_at--797--9532Chr12:1887008..1887032 (25 bp)
TCTTGGGCTTTATCGTATATAGTTT
LOC_Os12g04424
Os.5263.2.S1_x_at--232--3252Chr12:1887086..1887110 (25 bp)
CAAGCGTGGTGTTATGATATGAAGC
LOC_Os12g04424
Os.5263.2.S1_x_at--134--1272Chr12:1887128..1887152 (25 bp)
AGATCTAGCATTTAGTGAGTGTTCA
LOC_Os12g04424
Target Sequence 
GGGTTTCCAGACAACATCAAGATGAGTCCTAGAGGAGGGTTTTGGGTTGGTCTTCATGCCNAAGAGAGGGAAGATCNGCT
GANTGGTCAATNNCNNACCCNTTGGCTAAGGAAANTAATCTTGAAGCTACCAGCTCNAACGCATTCAACGCATCACATCG
TTCTTGACNAGGATTNGGTCGTCANGTGATAGCTTTGAGGTTGAGTGAGGATGGGAAGACCATAGAAGCAATGAGTGTTC
ATGGTGATGTTAGGAAGTTGTTCAAGTCTATTAGCGAAGTTGAAGAAAAGGATGGGAACCTCTGGATAGGATCTGTTTTG
TCACCTTTTCTTGGGCTTTATCGTATATAGTTTAATACATAGAGAGAGAATGCATAAGTTACAAAGGTAGTGAAGATATT
AGTATACAAGCGTGGTGTTATGATATGAAGCATATGTNAACAAAATAATAGATCTAGCATTTAGTGAGTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5263.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis