Browse Element(s) Details


Os.52653.1.S1_at

Description gb:AK068563.1
DB_XREF= gi:32978580
TID=Os.52653.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153E04, full insert sequence.
FL= gb:AK068563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3842011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52653.1.S1_at--1093--3271Chr04:22619694..22619718 (25 bp)
CAAAAGCCGCTCTTCATGCATTGAG
LOC_Os04g38420
Os.52653.1.S1_at--610--10431Chr04:22619289..22619313 (25 bp)
TTATGATTGTTGCACCTGGAGGGAC
LOC_Os04g38420
Os.52653.1.S1_at--376--6191Chr04:22619191..22619215 (25 bp)
GAGGAATCCCTCAGAGCCAGGACTG
LOC_Os04g38420
Os.52653.1.S1_at--151--1691Chr04:22619177..22619201 (25 bp)
AGCCAGGACTGATGCTTCCCAGGGT
LOC_Os04g38420
Os.52653.1.S1_at--605--7251Chr04:22619154..22619178 (25 bp)
GTCCTGGTTCTACTCCAGCAGAAGA
LOC_Os04g38420
Os.52653.1.S1_at--683--9791Chr04:22619099..22619123 (25 bp)
TAAGAAGAATCCTCCAGCCTGGTTT
LOC_Os04g38420
Os.52653.1.S1_at--197--9931Chr04:22619071..22619095 (25 bp)
TACGGCCAGTTCAGTGCTATTCTAA
LOC_Os04g38420
Os.52653.1.S1_at--167--2711Chr04:22619048..22619072 (25 bp)
AAGCTTGTTGTACTATGCACCACTA
LOC_Os04g38420
Os.52653.1.S1_at--174--1311Chr04:22618950..22618974 (25 bp)
AGAGGTTGCCACTCAGATAACCCGC
LOC_Os04g38420
Os.52653.1.S1_at--776--10471Chr04:22618904..22618928 (25 bp)
TTACAGGGACCATTCATTCAAGCGA
LOC_Os04g38420
Os.52653.1.S1_at--193--311Chr04:22618836..22618860 (25 bp)
ATAGCGGTGCTAGTTTGTTCATGTA
LOC_Os04g38420
Target Sequence 
CAAAAGCCGCTCTTCATGCATTGAGCGATACGCTAAGACTGGAGCTAAAAAGTTTCGGAATTAATGTTATGATTGTTGCA
CCTGGAGGGACAAAGTCGAATCTGGGAAGTAACTCTACATCCAAGTATGTTCAAATACGTGACTGGAAGTACTACAAAAA
ATTCGAGGAATCCCTCAGAGCCAGGACTGATGCTTCCCAGGGTCCTGGTTCTACTCCAGCAGAAGACCTCGCAAAAAGGG
TTGTTGCTTTGGTTCTTAAGAAGAATCCTCCAGCCTGGTTTGCTTACGGCCAGTTCAGTGCTATTCTAAGCTTGTTGTAC
TATGCACCACTATGGTTTAGAGATTACTTCTATAAGATTGTCATGAAATGCTAGAACTTCTGATGTCAGTAAGTTCAAAG
GACAAAGAGGTTGCCACTCAGATAACCCGCAATACATACTTGCATACAGTTTTACAGGGACCATTCATTCAAGCGAAAAG
GCCCCTCCCAGTGTATGCCATCTTTTTTCACCTGTAATAATAGCGGTGCTAGTTTGTTCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis