Browse Element(s) Details


Os.52762.1.S1_at

Description gb:AK069130.1
DB_XREF= gi:32979154
TID=Os.52762.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008H01, full insert sequence.
FL= gb:AK069130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0760011/11Calcium-binding protein 39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07540OsAffx.3165.1.S1_at11/113+3824623..3825543bHLH family protein, putative, expressed
LOC_Os03g07560OsAffx.25010.1.S1_x_at11/113+3829576..3829905hypothetical protein
LOC_Os03g07570Os.17960.1.S1_at11/113+3833415..3837453Alanine-glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed
LOC_Os03g07580Os.19264.1.S1_at11/113+3838558..3843836nucleoporin family protein, putative, expressed
LOC_Os03g07590Os.12176.1.S1_at11/113+3845621..3846232expressed protein
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein
LOC_Os03g07660OsAffx.25011.1.S1_at11/113+3872158..3872520hypothetical protein
LOC_Os03g07670NANA3+3873943..3877272transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52762.1.S1_at--508--5191Chr03:3847235..3847259 (25 bp)
GCAATGGTGCGCTATGTTAGCTCAA
LOC_Os03g07600
Os.52762.1.S1_at--970--3211Chr03:3846936..3846960 (25 bp)
CAAGTTGAGGCTTTTCGCGTTTTCA
LOC_Os03g07600
Os.52762.1.S1_at--803--1611Chr03:3846833..3846857 (25 bp)
AGCTGTTCACTTGCAATCCGAAGAA
LOC_Os03g07600
Os.52762.1.S1_at--869--9251Chr03:3846764..3846788 (25 bp)
TCCTCAGGTTCTTGGCAGATTTCAC
LOC_Os03g07600
Os.52762.1.S1_at--37--1211Chr03:3846624..3846648 (25 bp)
AGTTCGAGGCCGACAAAGCCCAGGT
LOC_Os03g07600
Os.52762.1.S1_at--596--2651Chr03:3846609..3846633 (25 bp)
AAGCCCAGGTTGTCACCGAGATATC
LOC_Os03g07600
Os.52762.1.S1_at--852--4851Chr03:3846465..3846489 (25 bp)
GCTACGATGCTTGTGGTTTGGGCCA
LOC_Os03g07600
Os.52762.1.S1_at--464--4391Chr03:3846444..3846468 (25 bp)
GCCACTTGTCCATTGAACTTGTAAC
LOC_Os03g07600
Os.52762.1.S1_at--774--7051Chr03:3846424..3846448 (25 bp)
GTAACTGGGCCGTTTGCTTGATAGC
LOC_Os03g07600
Os.52762.1.S1_at--417--10711Chr03:3846411..3846435 (25 bp)
TTGCTTGATAGCCTCTACTACTACT
LOC_Os03g07600
Os.52762.1.S1_at--959--2011Chr03:3846395..3846419 (25 bp)
ACTACTACTAATGTGTGCGCCCTTC
LOC_Os03g07600
Target Sequence 
GCAATGGTGCGCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGGGAGCAAAGCAGGGCCATTCA
AGTTGAGGCTTTTCGCGTTTTCAAGCTGTTCACTTGCAATCCGAAGAAGCCACCTGAGATCGTGGGTATACTGGTGACAA
ACAAGAGCAAAATCCTCAGGTTCTTGGCAGATTTCACAATAGAAAAAGAGGATCNGCAGTTCGAGGCCGACAAAGCCCAG
GTTGTCACCGAGATATCGGCCATGTGATCAAACAACNGGAGAAAGCGTTGATATCCACAGAGAGTGGAGTTCCTCTTGTT
TTCGTTTTCTTCATCATAATCTAACCAAATGGAAAGGAAATCAAGCTGATTCTACTGCTACGATGCTTGTGGTTTGGGCC
ACTTGTCCATTGAACTTGTAACTGGGCCGTTTGCTTGATAGCCTCTACTACTACTAATGTGTGCGCCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis