Browse Element(s) Details


Os.52801.1.S1_at

Description gb:AK069343.1
DB_XREF= gi:32979367
TID=Os.52801.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011G11, full insert sequence.
FL= gb:AK069343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g302409/11MutS family domain IV containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30210Os.50403.1.S1_at10/117+17844131..17847023Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g30220Os.15994.1.S1_at11/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.7245.1.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.2609.2.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30230OsAffx.22940.2.S1_s_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.3.S1_x_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.18.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.3.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.1.S1_s_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.2.S1_at8/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.31552.2.S1_at1/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30240Os.52801.1.S1_at9/117+17868931..17878469MutS family domain IV containing protein
LOC_Os07g30250Os.52388.1.S1_x_at5/117+17880013..17885956hypothetical protein
LOC_Os07g30260OsAffx.28672.1.S1_at11/117+17888462..17889043hypothetical protein
LOC_Os07g30270Os.2741.4.S1_x_at8/117+17890565..17896722retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g30280Os.51957.1.S1_at7/117+17900946..17902966csAtPR5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52801.1.S1_at--1069--2771Chr07:17876848..17876872 (25 bp)
AAGAGCTACGTCTTCCTCTGATGGG
LOC_Os07g30240
Os.52801.1.S1_at--380--431NONE
ATCTACCAAAGCCTACACGGTGTTT
NONE
Os.52801.1.S1_at--698--7431Chr07:17877768..17877792 (25 bp)
GTGTTTGCCACGCACATGGAGAGCT
LOC_Os07g30240
Os.52801.1.S1_at--336--6011Chr07:17877786..17877810 (25 bp)
GAGAGCTTGTCAGAACTTGCAACCA
LOC_Os07g30240
Os.52801.1.S1_at--614--6371Chr07:17877827..17877851 (25 bp)
GATCCTCCATTTTGAAGTCGACCTG
LOC_Os07g30240
Os.52801.1.S1_at--399--3311Chr07:17877991..17878015 (25 bp)
CACACTATGGTCTTTTGCTGGCAAA
LOC_Os07g30240
Os.52801.1.S1_at--339--5051Chr07:17878050..17878074 (25 bp)
GCAGCAAGCATCACTTCACGGATCA
LOC_Os07g30240
Os.52801.1.S1_at--767--3351Chr07:17878364..17878388 (25 bp)
CACGCAACGGCTCATCTGCTTGAAG
LOC_Os07g30240
Os.52801.1.S1_at--176--3731Chr07:17878409..17878433 (25 bp)
CTACATCCGGGAAGCGTTGCAGAAT
LOC_Os07g30240
Os.52801.1.S1_at--707--9311Chr07:17878433..17878457 (25 bp)
TCTCAAGGACGGCTATGCTGCAGGC
LOC_Os07g30240
Os.52801.1.S1_at--838--9111Chr07:17878448..17878472 (25 bp)
TGCTGCAGGCCGCTTGACATGAGAA
NONE
Target Sequence 
AAGAGCTACGTCTTCCTCTGATGGGTTGGCAATTGCATGGAGCTGCTGTGAATATCTATTATCTACCAAAGCCTACACGG
TGTTTGCCACGCACATGGAGAGCTTGTCAGAACTTGCAACCATCTATCCAAACGTGAAGATCCTCCATTTTGAAGTCGAC
CTGAGAAACGACCGCCTCGATTTCAAGTTCCGGTTGAAGGATGGTGTCCGGAAAGTACCACACTATGGTCTTTTGCTGGC
AAAGGTGGCTGGTCTCCCTTCTTCAGTGATCGACACTGCAGCAAGCATCACTTCACGGATCACAGAACAGGAAATGGTGA
GGAAGGACGACAACTGCGAGCAGTACCGGTCGCTCCAGATGGCGTACCAGGTCACGCAACGGCTCATCTGCTTGAAGCAA
TCCAACCAAGGCGATGACTACATCCGGGAAGCGTTGCAGAATCTCAAGGACGGCTATGCTGCAGGCCGCTTGACATGAGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis