Browse Element(s) Details


Os.53028.1.S1_at

Description gb:AK070509.1
DB_XREF= gi:32980533
TID=Os.53028.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054E18, full insert sequence.
FL= gb:AK070509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0526011/11Pectate lyase precursor, putative, expressed
LOC_Os09g199601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53028.1.S1_at--882--1011Chr06:2373362..2373386 (25 bp)
AGGTTCAGGGCAAGCGACGACATGA
LOC_Os06g05260
Os.53028.1.S1_at--55--7031Chr06:2373412..2373436 (25 bp)
GTACACGAGCTACGACGAGTACAAG
LOC_Os06g05260
Os.53028.1.S1_at--599--9371Chr06:2373528..2373552 (25 bp)
TCGACCTCATCCAGGCCAGGAACGG
LOC_Os06g05260
Os.53028.1.S1_at--189--9931Chr06:2373557..2373581 (25 bp)
TACGTCGGCCGGATGACCAGGTTCG
LOC_Os06g05260
Os.53028.1.S1_at--220--7991Chr06:2373567..2373591 (25 bp)
GGATGACCAGGTTCGCCGGCACGCT
LOC_Os06g05260
Os.53028.1.S1_at--561--9171Chr06:2373596..2373620 (25 bp)
TGCCGTGTCGGCAAGAAATGCTAGG
LOC_Os06g05260
Os.53028.1.S1_at--162--651Chr06:2373622..2373646 (25 bp)
ATGCATATGCTTGCTACTCACCGTG
LOC_Os06g05260
Os.53028.1.S1_at--1131--9671Chr06:2373639..2373663 (25 bp)
TCACCGTGTGCGTGCCAAGGACATC
LOC_Os06g05260
Os.53028.1.S1_at--599--6191Chr06:2373691..2373715 (25 bp)
GAGGAATTTTCCATGACGATCGCAT
LOC_Os06g05260
Os.53028.1.S1_at--1077--7891Chr06:2373757..2373781 (25 bp)
GGTTCGGCAGTAATGCAATCATTTG
LOC_Os06g05260
Os.53028.1.S1_at--253--172Chr06:2373830..2373854 (25 bp)
ATTTTGGTCATTTCGGTCCTCTCCG
LOC_Os06g05260
Target Sequence 
AGGTTCAGGGCAAGCGACGACATGAAGCTCAAGGAGGTGACCAAGAGGGAGTACACGAGCTACGACGAGTACAAGGAGTG
GGTGTGGAAGTCGCAGGACGACCTCTTCCTCAACGGCGCCTTCTTCAACGAGTCCGGCGGCCGGAACGAGCGCCGGTACA
ACCGGCTCGACCTCATCCAGGCCAGGAACGGCCGCTACGTCGGCCGGATGACCAGGTTCGCCGGCACGCTGCCATGCCGT
GTCGGCAAGAAATGCTAGGCATGCATATGCTTGCTACTCACCGTGTGCGTGCCAAGGACATCATCATGATGATGCAGATG
CAGAGAGGAGAGGAATTTTCCATGACGATCGCATGGATATTTATATGTATGAATTATATTTCATATATATAATATGGTTC
GGCAGTAATGCAATCATTTGCAAAATTGCATAAGCCTTAGAGAACAGGGTTCGAAATTTTGGACCAAAATTTTGGTCATT
TCGGTCCTCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis