Browse Element(s) Details

Os.53045.1.S1_at

Description

gb:AK070582.1
DB_XREF= gi:32980606
TID=Os.53045.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061B22, full insert sequence.
FL= gb:AK070582.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05560	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05500	NA	NA	6	+	2483788..2492292	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510	Os.55293.1.S1_at	10/11	6	+	2496635..2497203	expressed protein
LOC_Os06g05520	OsAffx.15273.1.S1_at	11/11	6	+	2497864..2501888	Protein kinase domain containing protein, expressed
LOC_Os06g05520	Os.8016.1.S1_a_at	11/11	6	+	2497864..2501888	Protein kinase domain containing protein, expressed
LOC_Os06g05530	Os.50965.1.S1_at	11/11	6	+	2504624..2508041	expressed protein
LOC_Os06g05540	OsAffx.15274.1.S1_at	11/11	6	+	2509291..2509872	hypothetical protein
LOC_Os06g05550	Os.5727.1.S1_at	10/11	6	+	2514767..2516940	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560	Os.53045.1.S1_at	11/11	6	+	2517213..2519939	expressed protein
LOC_Os06g05570	NA	NA	6	+	2521000..2521443	transposon protein, putative, unclassified
LOC_Os06g05580	Os.50550.1.S1_at	11/11	6	+	2528104..2530646	F-box domain containing protein, expressed
LOC_Os06g05590	Os.52010.1.A1_at	11/11	6	+	2531615..2533591	F-box domain containing protein, expressed
LOC_Os06g05590	OsAffx.15275.1.S1_at	10/11	6	+	2531615..2533591	F-box domain containing protein, expressed
LOC_Os06g05600	OsAffx.15276.1.S1_at	11/11	6	+	2534431..2535841	F-box domain containing protein, expressed
LOC_Os06g05610	Os.23589.1.A1_at	11/11	6	+	2536904..2538470	F-box domain containing protein, expressed
LOC_Os06g05620	OsAffx.27465.1.S1_at	11/11	6	+	2541031..2542344	F-box domain containing protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53045.1.S1_at--56--1029	1	Chr06:2519353..2519377 (25 bp)	TTTCCAACCTTGTCGTGAGAGTCAT	LOC_Os06g05560
Os.53045.1.S1_at--265--881	1	Chr06:2519430..2519454 (25 bp)	TGATTCGGCTTTTCGGTTACCCATT	LOC_Os06g05560
Os.53045.1.S1_at--1022--885	1	Chr06:2519470..2519494 (25 bp)	TGATGTCCTTGAAGATCCGCGTACT	LOC_Os06g05560
Os.53045.1.S1_at--964--269	1	Chr06:2519571..2519595 (25 bp)	AAGCTCTCTTTGTTGGCACACATGG	LOC_Os06g05560
Os.53045.1.S1_at--619--285	1	Chr06:2519600..2519624 (25 bp)	AAGTCTGTCCCTGCTGTGGAATGTG	LOC_Os06g05560
Os.53045.1.S1_at--998--23	1	Chr06:2519651..2519675 (25 bp)	ATATCTGACTACAACCGGCCTTATT	LOC_Os06g05560
Os.53045.1.S1_at--830--1041	1	Chr06:2519671..2519695 (25 bp)	TTATTCTGCAAATCCTCTTGGCGAC	LOC_Os06g05560
Os.53045.1.S1_at--388--287	1	Chr06:2519749..2519773 (25 bp)	AAGTGGTAATCGTCACTCTGGCGTC	LOC_Os06g05560
Os.53045.1.S1_at--637--861	1	Chr06:2519815..2519839 (25 bp)	TGGTGCTATATAATCAGCCCCTCTG	LOC_Os06g05560
Os.53045.1.S1_at--345--769	1	Chr06:2519855..2519879 (25 bp)	GGGTTTCTCTCATATGCACATGCAA	LOC_Os06g05560
Os.53045.1.S1_at--787--677	1	Chr06:2519912..2519936 (25 bp)	GTTACTTGTTGCGTCCTGATTGAAT	LOC_Os06g05560

Target Sequence

TTTCCAACCTTGTCGTGAGAGTCATCCCCGGATGCTGTGGCGATATCTAGTTGAATCTGGTGGAAGATTGTTGCAGGTGA
TTCGGCTTTTCGGTTACCCATTCCCTCTGTCACATGATGATGTCCTTGAAGATCCGCGTACTCTTTCATTTGTGGTATAT
GAGGCAGATTTGAGCAATGGCTCTCGCATGTGGAGAAGGGTAGAATCTTTGGGAGGCCAAGCTCTCTTTGTTGGCACACA
TGGCTCCAAGTCTGTCCCTGCTGTGGAATGTGGAGCTCAGGAGGACTGCATCTACTTCATATCTGACTACAACCGGCCTT
ATTCTGCAAATCCTCTTGGCGACTCTGGCATCTACAACATGAGAAACGAGATGATAACGCCGTTGGTGCGTTTGGTAAGT
GGTAATCGTCACTCTGGCGTCTACTACCAGTGGCGACATCCGAGATGGTTCTTCCCTGCAGATGGTGCTATATAATCAGC
CCCTCTGCATGGCCCTCTTTGTGGGTTTCTCTCATATGCACATGCAACATGTAAACTGGTGGATGATGATTAATGTTTTG
TTACTTGTTGCGTCCTGATTGAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis