Browse Element(s) Details


Os.53063.1.S1_at

Description gb:AK070657.1
DB_XREF= gi:32980681
TID=Os.53063.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056H15, full insert sequence.
FL= gb:AK070657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4055011/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40510Os.26572.1.S1_at11/112+24563620..24566537Two-component response regulator-like PRR1, putative, expressed
LOC_Os02g40520NANA2+24572108..24572527hypothetical protein
LOC_Os02g40530Os.49829.1.S1_at11/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40530Os.57514.1.S1_x_at1/112+24574588..24576658Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g40540OsAffx.24662.1.S1_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.24662.1.S1_x_at10/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.9323.1.S1_at5/112+24586467..24587608hypothetical protein
LOC_Os02g40540OsAffx.18095.1.S1_x_at1/112+24586467..24587608hypothetical protein
LOC_Os02g40550Os.53063.1.S1_at11/112+24589318..24591097Lung seven transmembrane receptor family protein, expressed
LOC_Os02g40560OsAffx.24663.1.S1_at11/112+24591301..24592017hypothetical protein
LOC_Os02g40570OsAffx.22848.3.S1_x_at3/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_at2/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40570OsAffx.22848.4.S1_x_at1/112+24593903..24599860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40580NANA2+24605906..24612410retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53063.1.S1_at--715--6431Chr02:24590538..24590562 (25 bp)
GATCATCTGGTCGATCCGCAGCATG
LOC_Os02g40550
Os.53063.1.S1_at--548--1451Chr02:24590606..24590630 (25 bp)
AGAAGCTCACGCTGTTCAAGCGCTT
LOC_Os02g40550
Os.53063.1.S1_at--1127--8791Chr02:24590759..24590783 (25 bp)
TGTTCGTTTTCTACAACTTCCAGCC
LOC_Os02g40550
Os.53063.1.S1_at--375--8391Chr02:24590787..24590811 (25 bp)
GGCGAAGAACCCGTACTTGTACATT
LOC_Os02g40550
Os.53063.1.S1_at--723--1831Chr02:24590855..24590879 (25 bp)
ACGAAGGTCGATTTTGAGCGCCCTC
LOC_Os02g40550
Os.53063.1.S1_at--872--6831Chr02:24590919..24590943 (25 bp)
GTTTCATTAGTTGGCTAGCTGCGTT
LOC_Os02g40550
Os.53063.1.S1_at--203--10191Chr02:24590957..24590981 (25 bp)
TATATGTTTCGTGCTCGATCGGAGC
LOC_Os02g40550
Os.53063.1.S1_at--567--9331Chr02:24590989..24591013 (25 bp)
TCGCGGATTGGCGTGTGCCTGAAAC
LOC_Os02g40550
Os.53063.1.S1_at--227--6271Chr02:24591020..24591044 (25 bp)
GATGTGACGACTGGTGTGTCTCTCC
LOC_Os02g40550
Os.53063.1.S1_at--633--7451Chr02:24591035..24591059 (25 bp)
GTGTCTCTCCCTTTTGTACAAGAAG
LOC_Os02g40550
Os.53063.1.S1_at--1118--5291Chr02:24591056..24591080 (25 bp)
GAAGGCATGCTCAACGGATCGGGAA
LOC_Os02g40550
Target Sequence 
GATCATCTGGTCGATCCGCAGCATGCGCGAGGCATCCAAGACCGATGGCAAGGCGGCGCTCAACCTCCAGAAGCTCACGC
TGTTCAAGCGCTTCTACCTCGTCGTCGTCGGCTACCTCTACTTCACCCGGATCATCGCGTCGGCGTTCCTCGCCTTGCTC
AGCTACAAGTACCAGTGGGGCGTCAACGTGGCCATCGAGGCCGCCAGCCTCGCCTTCTACCTGTTCGTTTTCTACAACTT
CCAGCCGGTGGCGAAGAACCCGTACTTGTACATTGGCGACACGGTGGAGGACGCGGCGGTCGAGCGTGAGATGGACGACG
AAGGTCGATTTTGAGCGCCCTCGTGGATCGTCCATATGATTTTTCCCCCCAAGTTTTATGCGTTTCATTAGTTGGCTAGC
TGCGTTAATTGTGTACGACTATATGTTTCGTGCTCGATCGGAGCGTCAGGCTCGCGGATTGGCGTGTGCCTGAAACGGTG
ATGATGTGACGACTGGTGTGTCTCTCCCTTTTGTACAAGAAGGCATGCTCAACGGATCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis