Browse Element(s) Details

Os.53101.1.S1_at

Description

gb:AK070825.1
DB_XREF= gi:32980848
TID=Os.53101.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064P05, full insert sequence.
FL= gb:AK070825.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g50570	10/11	Serine carboxypeptidase family protein, expressed
LOC_Os10g40220	1/11	expressed protein
LOC_Os01g03730	1/11	S1/P1 Nuclease family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g50520	NA	NA	5	+	28888150..28892854	retrotransposon protein, putative, unclassified
LOC_Os05g50530	OsAffx.19258.2.S1_x_at	10/11	5	+	28893468..28896400	hypothetical protein
LOC_Os05g50530	OsAffx.24518.2.S1_x_at	2/11	5	+	28893468..28896400	hypothetical protein
LOC_Os05g50530	Os.57200.1.S1_x_at	1/11	5	+	28893468..28896400	hypothetical protein
LOC_Os05g50540	Os.28943.1.S1_x_at	4/11	5	+	28896949..28898187	retrotransposon protein, putative, unclassified
LOC_Os05g50550	Os.18305.1.S2_at	11/11	5	+	28901377..28904741	Polyprenyl synthetase family protein, expressed
LOC_Os05g50550	Os.18305.1.S1_at	11/11	5	+	28901377..28904741	Polyprenyl synthetase family protein, expressed
LOC_Os05g50560	Os.52787.1.S1_at	7/11	5	+	28906389..28912094	mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570	Os.53101.1.S1_at	10/11	5	+	28912701..28914261	Serine carboxypeptidase family protein, expressed
LOC_Os05g50580	Os.56284.1.S1_at	11/11	5	+	28916940..28918772	Serine carboxypeptidase family protein, expressed
LOC_Os05g50590	OsAffx.15183.1.S1_at	10/11	5	+	28918822..28919562	hypothetical protein
LOC_Os05g50600	Os.27648.1.S1_at	11/11	5	+	28920855..28922556	Serine carboxypeptidase family protein, expressed
LOC_Os05g50600	Os.45963.1.S1_x_at	1/11	5	+	28920855..28922556	Serine carboxypeptidase family protein, expressed
LOC_Os05g50610	Os.29987.2.S1_at	11/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.29987.1.S1_at	11/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.43567.1.S1_x_at	5/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.53217.1.S1_x_at	4/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610	Os.38172.1.S1_x_at	2/11	5	+	28925864..28929828	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624	Os.51355.1.S1_at	11/11	5	+	28938490..28940826	hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624	Os.7726.1.S1_at	9/11	5	+	28938490..28940826	hAT family dimerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006308	biological_process	DNA catabolism
GO:0006508	biological_process	proteolysis
GO:0048443	biological_process	stamen development
GO:0000014	molecular_function	single-stranded DNA specific endodeoxyribonuclease activity
GO:0003676	molecular_function	nucleic acid binding
GO:0004185	molecular_function	serine carboxypeptidase activity
GO:0004519	molecular_function	endonuclease activity
GO:0016891	molecular_function	endoribonuclease activity, producing 5'-phosphomonoesters

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53101.1.S1_at--1060--413	1	NONE	CGCTGCTGAACGGCGCCGAAGCGAA	NONE
Os.53101.1.S1_at--44--875	1	Chr05:28913874..28913898 (25 bp)	TGTACGGCGGGATCCGCGACGTGAA	LOC_Os05g50570
Os.53101.1.S1_at--478--929	1	Chr05:28913886..28913910 (25 bp)	TCCGCGACGTGAAGGACGGGCCGGT	LOC_Os05g50570
Os.53101.1.S1_at--1111--455	1	Chr05:28914030..28914054 (25 bp)	GCGCGCTCGTGAACGTTGCGGTGTA	LOC_Os05g50570
Os.53101.1.S1_at--1094--939	1	Chr05:28914069..28914093 (25 bp)	TCGTGCCGTTTTCTCAAGGGCGCGC	LOC_Os05g50570
Os.53101.1.S1_at--412--917	1	Chr05:28914072..28914096 (25 bp)	TGCCGTTTTCTCAAGGGCGCGCGGC	LOC_Os05g50570
Os.53101.1.S1_at--763--1055	1	Chr05:28914122..28914146 (25 bp)	TTCGGCAAGGGATTGTTCGGCGCCA	LOC_Os05g50570
Os.53101.1.S1_at--488--837	1	Chr05:28914157..28914181 (25 bp)	GGCGTAAGGCAAAATGTTTCTTCAT	LOC_Os05g50570
Os.53101.1.S1_at--830--73	1	Chr05:28914170..28914194 (25 bp)	ATGTTTCTTCATTTATAGTAGGGAG	LOC_Os05g50570
Os.53101.1.S1_at--683--1017	1	Chr05:28914183..28914207 (25 bp)	TATAGTAGGGAGTATTTTCTCCGTT	LOC_Os05g50570
Os.53101.1.S1_at--44--955	11	Chr11:6875522..6875563 (24 bp)	TCTAGCATTGCTAATATCTATATAG	NONE

Target Sequence

CGCTGCTGAACGGCGCCGAAGCGAAGGCGGCGCTGGGCGCGCGGGGCGACGCGGAGTGGAAGATGTGCAGCGCGGCGGTG
GGCGCGGCGCAGCACAAGGACGTGATGAAGAGCGTGAAGCCGGAGGTGGAGGCGCTGCTGCGGCGTGGGACGACGCCGAC
GCGCGTGCTGCTGTACGGCGGGATCCGCGACGTGAAGGACGGGCCGGTGTCCACGGAGGCGTGGGTTCGGGAGCTGGAGT
GGGACGGCCTCGCCGCGTTCCAGGACGCCGACCGCGCCGTGTGGCGACACCGAGGCGGCGAGCTCGCCGGGAGCGTGCAG
CGCCACGGCGCGCTCGTGAACGTTGCGGTGTATGGCGCGGGGCACTTCGTGCCGTTTTCTCAAGGGCGCGCGGCGCAGGA
GATGATCGAGGATTGGGTGTTCGGCAAGGGATTGTTCGGCGCCAGCGGCGGGAAGGCGTAAGGCAAAATGTTTCTTCATT
TATAGTAGGGAGTATTTTCTCCGTTTCATAATGTAAGACTTTCTAGCATTGCTAATATCTATATAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis