Browse Element(s) Details


Os.53116.1.S1_at

Description gb:AK070900.1
DB_XREF= gi:32980923
TID=Os.53116.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073C10, full insert sequence.
FL= gb:AK070900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2898011/11expressed protein
LOC_Os01g595701/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53116.1.S1_at--583--7351Chr05:16911878..16911902 (25 bp)
GTGAAACATCCATACCAAACTGACA
LOC_Os05g28980
Os.53116.1.S1_at--866--10792Chr11:21653764..21653817 (23 bp)
TTGTTCTTGGCTTGGTGGTTAGGAT
NONE
Os.53116.1.S1_at--571--7471Chr05:16911679..16911703 (25 bp)
GTGGGATTCAGTACAACTTATTACA
LOC_Os05g28980
Os.53116.1.S1_at--580--651Chr05:16911645..16911669 (25 bp)
ATGAACTAGTTCACCAGTTCCCTTG
LOC_Os05g28980
Os.53116.1.S1_at--814--6691Chr05:16911629..16911653 (25 bp)
GTTCCCTTGCTTCGATCACAAAAAT
LOC_Os05g28980
Os.53116.1.S1_at--229--792Chr05:16911606..16911630 (25 bp)
ATGGGCATAACTTTTCTTTGTTTTG
LOC_Os05g28980
Os.53116.1.S1_at--161--6811Chr05:16911587..16911611 (25 bp)
GTTTTGTCTTAGGTGGTGAAGCTCA
LOC_Os05g28980
Os.53116.1.S1_at--961--7931Chr05:16911503..16911527 (25 bp)
GGATTTGTGAGATACACCCTTTGAT
LOC_Os05g28980
Os.53116.1.S1_at--231--7871Chr05:16911420..16911444 (25 bp)
GGTATTGTTTTATCTGGTGCTGGTT
LOC_Os05g28980
Os.53116.1.S1_at--232--7791Chr05:16911405..16911429 (25 bp)
GGTGCTGGTTTAGGAAATTCTCTTT
LOC_Os05g28980
Os.53116.1.S1_at--132--6791Chr05:16911337..16911361 (25 bp)
GTTAGTTCTGACCATCTTTTGTAAA
LOC_Os05g28980
Target Sequence 
GTGAAACATCCATACCAAACTGACAATATTACATATTTTCATTTCAATCTAACAATATTACATATTTTCATTCAATCTAA
CAATATGATGATTGTTCTTGGCTTGGTGGTTAGGATTATTATTTGTCTATGGAAGAAAAGAGTGGTACTAACTAGTGATC
ACTTTATGTTTTGTGATTGGGACTTGTTCATGATTAATAGTGGGATTCAGTACAACTTATTACAATATCCTTTATGAACT
AGTTCACCAGTTCCCTTGCTTCGATCACAAAAATGGGCATAACTTTTCTTTGTTTTGTCTTAGGTGGTGAAGCTCATTGA
AATTGCAGGAATTTTCATGTTTTATTGCTTTCGTAGGATCGTTTACATTATATTTGGATTTGTGAGATACACCCTTTGAT
TAATATTTGAAATTATGATGGTGCTTGGATACGAGGGAAGGAAGTTTAGATGGTTACTGGTATTGTTTTATCTGGTGCTG
GTTTAGGAAATTCTCTTTTATCTATTTCTATTTTCTAAGATGTTTTTCTCAGATATTGGTTGTTAGTTCTGACCATCTTT
TGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis