Browse Element(s) Details


Os.53133.1.S1_x_at

Description gb:AK070957.1
DB_XREF= gi:32980980
TID=Os.53133.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023070E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070E02, full insert sequence.
FL= gb:AK070957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0960011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53133.1.S1_x_at--60--8091Chr05:5398945..5398969 (25 bp)
GGAGCTCCTCCTGACGTGGCAGTAC
LOC_Os05g09600
Os.53133.1.S1_x_at--1016--8931Chr05:5398956..5398980 (25 bp)
TGACGTGGCAGTACTCGGCGCCGTT
LOC_Os05g09600
Os.53133.1.S1_x_at--518--9451Chr05:5399157..5399181 (25 bp)
TCGGCGTCTGGGTCTGCATCTCCTA
LOC_Os05g09600
Os.53133.1.S1_x_at--1154--9051Chr05:5399171..5399195 (25 bp)
TGCATCTCCTAGCACTTCAGGTTGT
LOC_Os05g09600
Os.53133.1.S1_x_at--1003--9491Chr05:5399175..5399199 (25 bp)
TCTCCTAGCACTTCAGGTTGTGAAA
LOC_Os05g09600
Os.53133.1.S1_x_at--467--4451Chr05:5399182..5399206 (25 bp)
GCACTTCAGGTTGTGAAAAGGGACC
LOC_Os05g09600
Os.53133.1.S1_x_at--1003--10291Chr05:5399208..5399232 (25 bp)
TTTCTTGGGAATTTCTGTACTTTCT
LOC_Os05g09600
Os.53133.1.S1_x_at--824--8631Chr05:5399213..5399237 (25 bp)
TGGGAATTTCTGTACTTTCTTTTTG
LOC_Os05g09600
Os.53133.1.S1_x_at--322--9471Chr05:5399221..5399245 (25 bp)
TCTGTACTTTCTTTTTGTTTCTCTT
LOC_Os05g09600
Os.53133.1.S1_x_at--868--3091Chr05:5399256..5399280 (25 bp)
AATAGTATGTACTCATGTTTGATGA
LOC_Os05g09600
Os.53133.1.S1_x_at--134--5591Chr05:5399279..5399303 (25 bp)
GAAATTTTCTGTGCAAAGCTTTTGG
LOC_Os05g09600
Target Sequence 
GGAGCTCCTCCTGACGTGGCAGTACTCGGCGCCGTTCGCCGTCAACCTCGCGGCATCCGCCGCCTTCTTCAGCCTCCTTG
GCGCCGCCCCGATCTCCGTTGCCGTGCCCGTCACGAACGCCACCACCTTCGCCGCCACCGCTGTCGCCGCCGCCCTCCTC
GGCGAGGGCACGCGCGCAGCGCCCGCAGCGCTCGGCACGGCGCTCATCGTCCTCGGCGTCTGGGTCTGCATCTCCTAGCA
CTTCAGGTTGTGAAAAGGGACCCTTTCTTGGGAATTTCTGTACTTTCTTTTTGTTTCTCTTAAAATGATGGAATAGTATG
TACTCATGTTTGATGAAATTTTCTGTGCAAAGCTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53133.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis