Browse Element(s) Details


Os.53165.1.S1_at

Description gb:AK071140.1
DB_XREF= gi:32981163
TID=Os.53165.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081B16, full insert sequence.
FL= gb:AK071140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1054011/11F-box domain containing protein, expressed
LOC_Os09g329101/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative
LOC_Os03g10590Os.16689.1.S1_at11/113+5373048..5376102somatic embryogenesis related protein, putative, expressed
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53165.1.S1_at--351--1131Chr03:5357851..5357875 (25 bp)
AGTGCTTGACTATTGATCTTGCTTG
LOC_Os03g10540
Os.53165.1.S1_at--352--8851Chr03:5357864..5357888 (25 bp)
TGATCTTGCTTGGAGACTTTCCCCA
LOC_Os03g10540
Os.53165.1.S1_at--721--5692Chr09:19616928..19616947 (20 bp)
GAGACTTTCCCCAGCCTATGATTAT
LOC_Os09g32910
Os.53165.1.S1_at--279--3771Chr03:5357903..5357927 (25 bp)
CTCTCTGATTTCTTTTCTTGACGCT
LOC_Os03g10540
Os.53165.1.S1_at--701--6191Chr03:5358092..5358116 (25 bp)
GAGGCAAATGCTAGAACACCGTCAT
LOC_Os03g10540
Os.53165.1.S1_at--208--9831Chr03:5358197..5358221 (25 bp)
TACAACGTCGCTTAAGCACCTTAAA
LOC_Os03g10540
Os.53165.1.S1_at--276--3351Chr03:5358264..5358288 (25 bp)
CACGACAAATGCTTCCATATGGGTA
LOC_Os03g10540
Os.53165.1.S1_at--62--2911Chr03:5358288..5358312 (25 bp)
AAGGATATGCTCACCGAAGCCAAGA
LOC_Os03g10540
Os.53165.1.S1_at--1090--6611Chr03:5358375..5358399 (25 bp)
GTTGTGAAACCTTGCAACCGTTGCC
LOC_Os03g10540
Os.53165.1.S1_at--718--3251Chr03:5358389..5358413 (25 bp)
CAACCGTTGCCATGTTGCTGAATCT
LOC_Os03g10540
Os.53165.1.S1_at--664--6431Chr03:5358472..5358496 (25 bp)
GATCATGTTTTCTGTCTTCACACAA
LOC_Os03g10540
Target Sequence 
AGTGCTTGACTATTGATCTTGCTTGGAGACTTTCCCCAGCCTATGATTATTTCTCTCTGATTTCTTTTCTTGACGCTTCT
CCTTCCTTGGAGACTTTTTGTCTAGAGGACCGAATGGAGAATGAATTGATTATTGGAGATATGTCACATATGAGGCAAAT
GCTAGAACACCGTCATGACAACCTCCAGAGCGTGGAGATTATTGGCTTTTGCTATACAAAGAGCTTGATCGAGCTAACAT
GTCATATTCTTGACAATACAACGTCGCTTAAGCACCTTAAACTGGATACTACTCGTGATGTTTTTAGCTGTTCTACAGGC
AAACACGACAAATGCTTCCATATGGGTAAGGATATGCTCACCGAAGCCAAGAAAGCAGTTTTGGCAATTGAAACTTACAT
CGAGCCAAAAGTTCCCTCCACTGTCATGCTAAATGTTGTGAAACCTTGCAACCGTTGCCATGTTGCTGAATCTTAGTTCT
ATTTTTTTCCTAACATAATTCCTATGTAGATGATTATGGAGTTTTTTAACTGATCATGTTTTCTGTCTTCACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis