Browse Element(s) Details


Os.53304.1.S1_at

Description gb:AK071910.1
DB_XREF= gi:32981933
TID=Os.53304.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.53304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064H13, full insert sequence.
FL= gb:AK099026.1 gb:AK071910.1 gb:AK105917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g305109/11UDP-glycosyltransfersase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30490Os.27569.1.S2_at11/119+18617051..18617800EF hand family protein, expressed
LOC_Os09g30494Os.27691.1.S1_x_at5/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494OsAffx.19532.1.S1_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494Os.27691.2.S1_x_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30498NANA9+18633082..18634910hypothetical protein
LOC_Os09g30502OsAffx.1353.1.S1_x_at1/119+18636537..18637971transposon protein, putative, unclassified
LOC_Os09g30506Os.52062.1.S1_at11/119+18640599..18641302EF hand family protein, expressed
LOC_Os09g30510Os.53304.1.S1_at9/119+18641431..18642997UDP-glycosyltransfersase, putative, expressed
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53304.1.S1_at--750--7731Chr09:18641926..18641950 (25 bp)
GGTGGTTCGGGCAACCAGCACCCAA
LOC_Os09g30510
Os.53304.1.S1_at--113--3991Chr09:18641499..18641523 (25 bp)
CGTGTCGCGTTTGCCCGTCTCATGT
LOC_Os09g30510
Os.53304.1.S1_at--208--6851Chr09:18641491..18641515 (25 bp)
GTTTGCCCGTCTCATGTCTGAATTA
LOC_Os09g30510
Os.53304.1.S1_at--1016--4531Chr09:18641487..18641511 (25 bp)
GCCCGTCTCATGTCTGAATTACTCA
LOC_Os09g30510
Os.53304.1.S1_at--127--7171Chr09:18641483..18641507 (25 bp)
GTCTCATGTCTGAATTACTCAACGT
LOC_Os09g30510
Os.53304.1.S1_at--101--7171Chr09:18641476..18641500 (25 bp)
GTCTGAATTACTCAACGTGTAAGGT
LOC_Os09g30510
Os.53304.1.S1_at--1088--6611Chr09:18641453..18641477 (25 bp)
GTTGAAAATAGTATGGAATTTCCCA
LOC_Os09g30510
Os.53304.1.S1_at--651--8191Chr09:18641439..18641463 (25 bp)
GGAATTTCCCAATTGTATCTTACTA
LOC_Os09g30510
Os.53304.1.S1_at--112--4151Chr09:18641432..18641456 (25 bp)
CCCAATTGTATCTTACTACTCCGTT
LOC_Os09g30510
Os.53304.1.S1_at--466--3171Chr09:18641429..18641453 (25 bp)
AATTGTATCTTACTACTCCGTTCAA
NONE
Os.53304.1.S1_at--68--6791Chr09:18641425..18641449 (25 bp)
GTATCTTACTACTCCGTTCAAAAAT
NONE
Target Sequence 
GGTGGTTCGGGCAACCAGCACCCAACACCTCGACGCGCTCCTACCGGAGGTGTTCTTCGCAAGAACCAGCGGCCGCGGCC
TCGTCGTCAACAGCTGGGTGCCCCAGCCGAGCATCCTCCGCCACCGCGCCACCGCCGCGTTCGTGACGCACTGCGGGTGG
AACTCGGTGCTAGAGGGGATCACCGCGGGGGTGCCGATGCTCTGCTGGCCGCTGTACGCGGAGCAGAGGATGAACAAGGT
GCTCATGGTGGAGGNCATGGGCGTCGGCGTGGAGATGGAGGGATGGCTGGAAGGGCTGGTGACCGCCGAGGAGGTGGAGA
CGAAGGTGAGGCTGGTCATGGAGTCCGAGCATGGAAGGAAGGTTAGAGAGCGTGTCGAGGCGCACAGAGATGGCGTGGCC
ATGGCCTGGAAAGATGGTGGCTCGTCGCGTGTCGCGTTTGCCCGTCTCATGTCTGAATTACTCAACGTGTAAGGTTGAAA
ATAGTATGGAATTTCCCAATTGTATCTTACTACTCCGTTCAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis