Browse Element(s) Details


Os.53311.1.S1_at

Description gb:AK071940.1
DB_XREF= gi:32981963
TID=Os.53311.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013077N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077N22, full insert sequence.
FL= gb:AK071940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4953010/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed
LOC_Os07g49530Os.53311.1.S1_at10/117+29661669..29664616Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g49540Os.53149.1.S1_at11/117+29676793..29678581hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53311.1.S1_at--1023--5251NONE
GAATCCGGCTGCCAGCACTTATGAG
NONE
Os.53311.1.S1_at--70--5131Chr07:29663522..29663546 (25 bp)
GCAAAGCGCCGGTTACCCATTTTTG
LOC_Os07g49530
Os.53311.1.S1_at--298--951Chr07:29663549..29663573 (25 bp)
AGGACAGCAAAACCTTCTCCTACAG
LOC_Os07g49530
Os.53311.1.S1_at--83--10591Chr07:29663563..29663587 (25 bp)
TTCTCCTACAGCTGCACATAAGACG
LOC_Os07g49530
Os.53311.1.S1_at--401--451Chr07:29664174..29664198 (25 bp)
ATCTATGCGCTTGAGGCGTGCCTAC
LOC_Os07g49530
Os.53311.1.S1_at--383--1652Chr07:29664228..29664252 (25 bp)
AGCGACTTGAAGTTAGCTATGCCAA
LOC_Os07g49530
Os.53311.1.S1_at--125--3431Chr07:29664255..29664279 (25 bp)
CAGACGCATTCTGTAGTCCTGGATG
LOC_Os07g49530
Os.53311.1.S1_at--340--10391Chr07:29664346..29664370 (25 bp)
TTATTTGGTCGGCTATCCTTGTTTT
LOC_Os07g49530
Os.53311.1.S1_at--664--8172Chr07:29664404..29664428 (25 bp)
GGAACTTCCTGCTCTGAACGCTTAT
LOC_Os07g49530
Os.53311.1.S1_at--641--5452Chr07:29664419..29664443 (25 bp)
GAACGCTTATTTTCTATCTTCTATC
LOC_Os07g49530
Os.53311.1.S1_at--1033--431Chr07:29664434..29664458 (25 bp)
ATCTTCTATCTTCATGGCTATCCTT
LOC_Os07g49530
Target Sequence 
GAATCCGGCTGCCAGCACTTATGAGTGGGATGGCAGCGATTCCGAAGGGAAAAGGCCTGCAGCAAAGCGCCGGTTACCCA
TTTTTGAAAGGACAGCAAAACCTTCTCCTACAGCTGCACATAAGACGAGAAAAAAGTGGAGCGAGGAACAAGAAAAAACC
ATGCTGGAAGGGGTGGAGAAGTATGGAAAAGGCAACTGGAAAGATATCAAAATGGCATACCCTGATGTATTTGAAGATAG
ATCGACAGTAGATTTGAAGGATAAATTCAGAAATTTGGAAAGGCATCTATGCGCTTGAGGCGTGCCTACTTTAGGAGGAA
TTGTTATGGTATATATATAGCGACTTGAAGTTAGCTATGCCAAAGCAGACGCATTCTGTAGTCCTGGATGGATGATGGTA
GCTATGTTTATAGTGCCTTTTTTGGTTGTGATTTTGTGAAGTGTAGCCAGCTAGTTTTATTTGGTCGGCTATCCTTGTTT
TGTTTTGTACAGGATAGAGGAGCGATATCGGTGGGGAACTTCCTGCTCTGAACGCTTATTTTCTATCTTCTATCTTCATG
GCTATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis