Browse Element(s) Details


Os.5332.1.S1_at

Description gb:AK065385.1
DB_XREF= gi:32975403
TID=Os.5332.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023F24, full insert sequence.
FL= gb:AK065385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0427010/11Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os11g045009/11Cytochrome C biogenesis protein transmembrane region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0017004biological_processcytochrome complex assembly
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5332.1.S1_at--399--172Chr12:1807859..1807883 (25 bp)
ATTTTCTGTCAGGATCCGATTGTTG
LOC_Os12g04270
Os.5332.1.S1_at--851--9852Chr12:1807812..1807836 (25 bp)
TACAACTGGCTATGTTGCACCTCTT
LOC_Os12g04270
Os.5332.1.S1_at--1085--10732Chr12:1807783..1807807 (25 bp)
TTGCAGCTTCTTTTGCTGGAGCACT
LOC_Os12g04270
Os.5332.1.S1_at--204--9051NONE
TGCAGAGTTTGCTTTCCTTCAGGAG
NONE
Os.5332.1.S1_at--484--2611Chr12:1807057..1807568 (25 bp)
AACCCAATCAGTGGTGCATTTCTAC
LOC_Os12g04270
Os.5332.1.S1_at--274--7672Chr12:1807023..1807047 (25 bp)
GGGTTTATACCCTACTGGACAGGCT
LOC_Os12g04270
Os.5332.1.S1_at--63--8352Chr12:1807002..1807026 (25 bp)
GGCTGTTTCCTGCAACATCAATGGT
LOC_Os12g04270
Os.5332.1.S1_at--719--9932Chr12:1806939..1806963 (25 bp)
TACGAGGATCGCCATTGTTGAACAT
LOC_Os12g04270
Os.5332.1.S1_at--965--5472Chr12:1806863..1806887 (25 bp)
GAACTATCATCAGCTCTTCGTAGCT
LOC_Os12g04270
Os.5332.1.S1_at--494--6512Chr12:1806823..1806847 (25 bp)
GATATCTTAGTCTCAGCAATCTGTA
LOC_Os12g04270
Os.5332.1.S1_at--21--10212Chr12:1806755..1806779 (25 bp)
TATTTAGCTTCCGTTGCTTTTAAAG
LOC_Os12g04270
Target Sequence 
ATTTTCTGTCAGGATCCGATTGTTGGGGGAAGTTTGTTATTGACTTATACAACTGGCTATGTTGCACCTCTTCTCATTGC
AGCTTCTTTTGCTGGAGCACTGCAGAGTTTGCTTTCCTTCAGGAGGTATTCTGCATGGATAAACCCAATCAGTGGTGCAT
TTCTACTGGGTGGAGGGGTTTATACCCTACTGGACAGGCTGTTTCCTGCAACATCAATGGTGATGTAGAATGCATATCAT
AGTCGAACAAGAGCTGCAGTACGAGGATCGCCATTGTTGAACATGCGAATTATGTCAGAGTTGAAATGTAAAGTAGGTAA
TGATAAAATGCTAACGAACTATCATCAGCTCTTCGTAGCTTACATAGGTATATATGATATCTTAGTCTCAGCAATCTGTA
TAGAACGAGATAAGTTTTACCCCCCACACCCACCCACAAATGTTATTTAGCTTCCGTTGCTTTTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis