Browse Element(s) Details


Os.53358.1.S1_at

Description gb:AK104054.1
DB_XREF= gi:32989263
TID=Os.53358.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A02, full insert sequence.
FL= gb:AK104054.1 gb:AK072257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3756011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37520Os.6117.1.S1_at11/1111+21649398..21654156ETO1-like protein 1, putative, expressed
LOC_Os11g37530NANA11+21655234..21657383hypothetical protein
LOC_Os11g37540OsAffx.31345.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37540Os.55756.1.S1_at11/1111+21666648..21672150Serine/threonine-protein kinase Doa, putative, expressed
LOC_Os11g37550OsAffx.31346.1.S1_at11/1111+21672153..21673433Calmodulin-2/3/5, putative
LOC_Os11g37560Os.53358.1.S1_at11/1111+21674169..21677560expressed protein
LOC_Os11g37570OsAffx.19218.1.S1_at11/1111+21679829..21680233hypothetical protein
LOC_Os11g37580OsAffx.31347.2.S1_at11/1111+21685141..21686361hypothetical protein
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53358.1.S1_at--624--9851Chr11:21674717..21674741 (25 bp)
TACACTGACAAATGGGCTGAACGAT
LOC_Os11g37560
Os.53358.1.S1_at--811--191Chr11:21674647..21674671 (25 bp)
ATTTCGACCCGAATGGCCATGGAGT
LOC_Os11g37560
Os.53358.1.S1_at--484--7571Chr11:21674565..21674589 (25 bp)
GGGCGAGCATCACAACTGTACTGGT
LOC_Os11g37560
Os.53358.1.S1_at--132--2571Chr11:21674552..21674576 (25 bp)
AACTGTACTGGTTGGGTGCACAAGT
LOC_Os11g37560
Os.53358.1.S1_at--921--7751Chr11:21674510..21674534 (25 bp)
GGTGAGCACTGGGACACACACGTTC
LOC_Os11g37560
Os.53358.1.S1_at--687--2131Chr11:21674479..21674503 (25 bp)
ACACCTGGTATGAGCGTTTTCCGCA
LOC_Os11g37560
Os.53358.1.S1_at--262--6811Chr11:21674464..21674488 (25 bp)
GTTTTCCGCACTTTGGCTTCGAGCA
LOC_Os11g37560
Os.53358.1.S1_at--332--5951Chr11:21674444..21674468 (25 bp)
GAGCACTGCTTCAACAACTCGGTGC
LOC_Os11g37560
Os.53358.1.S1_at--792--1991Chr11:21674428..21674452 (25 bp)
ACTCGGTGCAGCTCCGGTCTGTGAA
LOC_Os11g37560
Os.53358.1.S1_at--167--5251Chr11:21674351..21674375 (25 bp)
GAATCTACTCAATTGCTATCATAAA
LOC_Os11g37560
Os.53358.1.S1_at--228--4851Chr11:21674317..21674341 (25 bp)
GCTACATGGCCATCTTTCATTTTTG
LOC_Os11g37560
Target Sequence 
TACACTGACAAATGGGCTGAACGATCAGAGGGTGACGGGTGGTCAAAGTGGGGCGATAAGTGGGATGAGCATTTCGACCC
GAATGGCCATGGAGTGAAGCAAGGGGAGACCTGGTGGGCAGGCAAGTACGGGGATCGCTGGAATCGCACCTGGGGCGAGC
ATCACAACTGTACTGGTTGGGTGCACAAGTATGGCAGGAGCAGCAGCGGTGAGCACTGGGACACACACGTTCCCCAGGAC
ACCTGGTATGAGCGTTTTCCGCACTTTGGCTTCGAGCACTGCTTCAACAACTCGGTGCAGCTCCGGTCTGTGAAGAGGCA
GACTCCAAAAAACACTAAGCCTGAAAAAGATTAGATATTTAGAATAGAATCTACTCAATTGCTATCATAAAAAATAGTTG
GCTACATGGCCATCTTTCATTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis