Browse Element(s) Details


Os.53365.1.S1_at

Description gb:AK102315.1
DB_XREF= gi:32987524
TID=Os.53365.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090F06, full insert sequence.
FL= gb:AK102315.1 gb:AK072287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4510011/11cryptochrome dash, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45040OsAffx.15932.1.S1_at10/116+27252386..27254042B-box zinc finger family protein
LOC_Os06g45050Os.54880.1.S1_at11/116+27256070..27260258Clathrin assembly protein, putative, expressed
LOC_Os06g45060Os.53705.1.S1_at11/116+27260314..27261597expressed protein
LOC_Os06g45070OsAffx.28110.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_x_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45080Os.25345.2.S1_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080Os.25345.1.S1_x_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090Os.46304.1.S1_a_at11/116+27270985..27274167expressed protein
LOC_Os06g45100Os.53365.1.S1_at11/116+27274529..27277847cryptochrome dash, putative, expressed
LOC_Os06g45110Os.17942.1.S1_at11/116+27278953..27283979expressed protein
LOC_Os06g45120Os.11821.1.S2_at11/116+27285311..27291850Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120Os.11821.1.S1_at10/116+27285311..27291850Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130Os.50560.1.S1_at11/116+27293151..27294057hypothetical protein
LOC_Os06g45130OsAffx.28111.1.S1_at11/116+27293151..27294057hypothetical protein
LOC_Os06g45140Os.1503.1.S1_at11/116+27298917..27301107bZIP transcription factor family protein, expressed
LOC_Os06g45150OsAffx.15933.1.S1_s_at11/116+27302502..27303231Pollen allergen family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006290biological_processpyrimidine dimer repair
GO:0009411biological_processresponse to UV
GO:0009414biological_processresponse to water deprivation
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0010118biological_processstomatal movement
GO:0005634cellular_componentnucleus
GO:0003913molecular_functionDNA photolyase activity
GO:0003914molecular_functionDNA (6-4) photolyase activity
GO:0009882molecular_functionblue light photoreceptor activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53365.1.S1_at--917--5851Chr06:27275615..27275639 (25 bp)
GAGCCAGGATCAGGCACTGTTTGAA
LOC_Os06g45100
Os.53365.1.S1_at--733--1071Chr06:27275490..27275606 (25 bp)
AGATGGTCGAACTGGGTACCCTCTT
LOC_Os06g45100
Os.53365.1.S1_at--8--9971Chr06:27275474..27275498 (25 bp)
TACCCTCTTATTGACGCCAACATGA
LOC_Os06g45100
Os.53365.1.S1_at--985--1631Chr06:27275439..27275463 (25 bp)
AGCGACAGGTTTCATGTCCAACCGT
LOC_Os06g45100
Os.53365.1.S1_at--837--2611Chr06:27275314..27275444 (25 bp)
AACCGTGGCCGTCAGATTGTCTGCT
LOC_Os06g45100
Os.53365.1.S1_at--370--7171Chr06:27275296..27275320 (25 bp)
GTCTGCTCATTTCTGGTCCGAGATA
LOC_Os06g45100
Os.53365.1.S1_at--785--1331Chr06:27274750..27274774 (25 bp)
AGAGTATGTTGCCTACTGGTTGCCA
LOC_Os06g45100
Os.53365.1.S1_at--929--4411Chr06:27274729..27274753 (25 bp)
GCCAGAGCTCCGATCAATTGCAAAG
LOC_Os06g45100
Os.53365.1.S1_at--38--3131Chr06:27274695..27274719 (25 bp)
AATTTCCCAGGAGCTTCATACATCA
LOC_Os06g45100
Os.53365.1.S1_at--387--2091Chr06:27274676..27274700 (25 bp)
ACATCAAGCAGGTTGTCCCACTGAA
LOC_Os06g45100
Os.53365.1.S1_at--613--5291Chr06:27274604..27274628 (25 bp)
GAAGGCCAGGCCACATGTATAGAAG
LOC_Os06g45100
Target Sequence 
GAGCCAGGATCAGGCACTGTTTGAATCTTGGAGAGATGGTCGAACTGGGTACCCTCTTATTGACGCCAACATGAAGGAGC
TTTTAGCGACAGGTTTCATGTCCAACCGTGGCCGTCAGATTGTCTGCTCATTTCTGGTCCGAGATATGGGTATTGATTGG
CGAATGGGAGCTGAATGGTTTGAAACATGCCTATTGGATTATGACCCAGCTTCAAATTATGGTAATTGGACATATGGAGC
AGGAGTTGGCAATGATCCAAGAGAAGACCGATACTTCAGTATACCTAAGCAAGCCAAGACATATGATCCTGATGGAGAGT
ATGTTGCCTACTGGTTGCCAGAGCTCCGATCAATTGCAAAGGAAAGAAGGAATTTCCCAGGAGCTTCATACATCAAGCAG
GTTGTCCCACTGAAATTTGATGGTGGACATCAGAAGAGAGATCAGCAGTTCAACAGGCAGAGAAGGCCAGGCCACATGTA
TAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis