Browse Element(s) Details


Os.53368.1.S1_at

Description gb:AK072806.1
DB_XREF= gi:32982829
TID=Os.53368.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023137F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023137F15, full insert sequence.
FL= gb:AK072306.1 gb:AK072806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4947011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49470Os.53368.1.S1_at11/117+29629278..29631774Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53368.1.S1_at--17--10711Chr07:29631208..29631232 (25 bp)
TTGCCTCCCAGACTTATGATCCAGA
LOC_Os07g49470
Os.53368.1.S1_at--651--8851Chr07:29631224..29631248 (25 bp)
TGATCCAGAGGCACATGGCGTCCAT
LOC_Os07g49470
Os.53368.1.S1_at--867--6251Chr07:29631263..29631287 (25 bp)
GATGTCTCCCGGCACACAAGGTGTA
LOC_Os07g49470
Os.53368.1.S1_at--555--6311Chr07:29631413..29631437 (25 bp)
GATGACCAGCCCAGAGATTTTGTTC
LOC_Os07g49470
Os.53368.1.S1_at--933--1311Chr07:29631471..29631495 (25 bp)
AGATGGTTCCTGGTTTCTGCAACAT
LOC_Os07g49470
Os.53368.1.S1_at--520--7351Chr07:29631555..29631579 (25 bp)
GTGAATTTCTTTCTCGAGTCTGTAT
LOC_Os07g49470
Os.53368.1.S1_at--242--3131Chr07:29631629..29631653 (25 bp)
AATTTTTGTCATCTCTTTGTTCCCT
LOC_Os07g49470
Os.53368.1.S1_at--517--10811Chr07:29631686..29631710 (25 bp)
TTGTCAGCTGCAGTTTCAGTTGCCT
LOC_Os07g49470
Os.53368.1.S1_at--1128--3891Chr07:29631709..29631733 (25 bp)
CTGGTGATGTTATTGCGTATGCCTC
LOC_Os07g49470
Os.53368.1.S1_at--769--6911Chr07:29631725..29631749 (25 bp)
GTATGCCTCAGACAGTATGCCATCA
LOC_Os07g49470
Os.53368.1.S1_at--810--3311Chr07:29631748..29631772 (25 bp)
CACTTACTATTGATGCGGTTTCTTA
LOC_Os07g49470
Target Sequence 
TTGCCTCCCAGACTTATGATCCAGAGGCACATGGCGTCCATCACACGTCACGTTTGATGTCTCCCGGCACACAAGGTGTA
TGAGGGATGCAGACTTAGGCTGAGGAGGTGCTGTAGAACAGAAAGCAGGAATTAAGGCTTCAGAAAGCCTAGAATATTTT
TTGCTAGATATGGTACCTGAGGAGATGTTGCTGACAGTCCATGGAGATGACCAGCCCAGAGATTTTGTTCATAGCAAGAG
AAAGAGAATCATAGAGAGAAATGAGATGGTTCCTGGTTTCTGCAACATGGAATGGTGATAGATTGATTTGTTTTCTCATG
ATAGGGATGGCTGCTGTTGTTGTACATGTGAATTTCTTTCTCGAGTCTGTATTTACATCAGTGTAGGAGTAGCCTGTAGC
GTAGTACATTTGGGTTCAAGGAATTTTTGTCATCTCTTTGTTCCCTGTGGGTGTGAGTTTCGGTTGCGTGCTGGAGGGTT
GTCAGCTGCAGTTTCAGTTGCCTGGTGATGTTATTGCGTATGCCTCAGACAGTATGCCATCACTTACTATTGATGCGGTT
TCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis