Browse Element(s) Details


Os.53409.1.A1_at

Description gb:AK072483.1
DB_XREF= gi:32982506
TID=Os.53409.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125G06, full insert sequence.
FL= gb:AK072483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1236011/11nuclear protein ZAP, putative, expressed
LOC_Os08g235901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12320NANA2+6406853..6415392retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g12330OsAffx.12000.1.S1_at11/112+6418378..6419378hypothetical protein
LOC_Os02g12330OsAffx.12000.1.S1_x_at10/112+6418378..6419378hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_s_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.1.S1_at9/112+6422491..6424004hypothetical protein
LOC_Os02g12350Os.20204.2.S1_a_at11/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_s_at10/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_x_at3/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.28463.1.S1_x_at1/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12360Os.53409.1.A1_at11/112+6433220..6441415nuclear protein ZAP, putative, expressed
LOC_Os02g12370Os.53540.1.S1_at11/112+6443131..6445361expressed protein
LOC_Os02g12380Os.20204.1.S1_at11/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.3.S1_a_at11/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.1.S1_s_at10/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.1.S1_x_at10/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12390OsAffx.30226.4.S1_x_at5/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.2.S1_s_at5/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.4.S1_at4/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.24587.1.S1_x_at4/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.442.1.S1_x_at4/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.1.S1_x_at3/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.2.S1_x_at3/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.30226.1.S1_at2/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.19052.1.S1_at1/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12390OsAffx.442.1.S1_at1/112+6454045..6458106retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53409.1.A1_at--790--7811Chr02:6433785..6433809 (25 bp)
GGTCAGGATACTCTAGGCATGGTTT
LOC_Os02g12360
Os.53409.1.A1_at--911--8452Chr08:14146327..14146346 (20 bp)
TGGCCATCAGTTTTGCTTCGGAATC
LOC_Os08g23590
Os.53409.1.A1_at--321--9451Chr02:6433744..6433768 (25 bp)
TCGGAATCAGTTTTGCTTCGTTGCA
LOC_Os02g12360
Os.53409.1.A1_at--467--10611Chr02:6433728..6433752 (25 bp)
TTCGTTGCAATTCTGCGGCTCGGAA
LOC_Os02g12360
Os.53409.1.A1_at--446--9131Chr02:6433715..6433739 (25 bp)
TGCGGCTCGGAATGTACTGCTGCTG
LOC_Os02g12360
Os.53409.1.A1_at--39--131Chr02:6433664..6433688 (25 bp)
ATTCACACAGTTCACGGAGAGCCCT
LOC_Os02g12360
Os.53409.1.A1_at--711--8431Chr02:6433633..6433657 (25 bp)
GGCCTTGTGCCTTGTCCATGTGTAC
LOC_Os02g12360
Os.53409.1.A1_at--1089--7431Chr02:6433614..6433638 (25 bp)
GTGTACCCCTTTGGTCACAAACAGA
LOC_Os02g12360
Os.53409.1.A1_at--17--6651Chr02:6433559..6433583 (25 bp)
GTTGTATCTGTAAGCTGTCCCAATA
LOC_Os02g12360
Os.53409.1.A1_at--758--10451Chr02:6433403..6433427 (25 bp)
TTACTTATTATGACTGCAGCCTGAT
LOC_Os02g12360
Os.53409.1.A1_at--746--8191Chr02:6433353..6433377 (25 bp)
GGAAGAGCCATATATACCTGTCTGA
LOC_Os02g12360
Target Sequence 
GGTCAGGATACTCTAGGCATGGTTTGGCCATCAGTTTTGCTTCGGAATCAGTTTTGCTTCGTTGCAATTCTGCGGCTCGG
AATGTACTGCTGCTGCCTGGCTCCTTTTTCCCAATTTCCCCATTCACACAGTTCACGGAGAGCCCTTGTTCCGGCCTTGT
GCCTTGTCCATGTGTACCCCTTTGGTCACAAACAGAAGGTAACGGGGAATGCAGATTTGTGGCACTGTTGTATCTGTAAG
CTGTCCCAATACCCAGAGGCTGCTAGTTAAAAAGCGCCCCCATAGAATGTAGCACTATCAGAAATGCTCAATTCTTGTTA
TTTAATATAGAGGTTTTCCAGAGTAGTACTATATTTGTAGTAGTGTTCTTATCATGTAGTCTTTACTTATTATGACTGCA
GCCTGATGTCTATAAATACAAGGCACATGGTAGGAAGAGCCATATATACCTGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53409.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis