Browse Element(s) Details


Os.53410.1.S1_at

Description gb:AK072496.1
DB_XREF= gi:32982519
TID=Os.53410.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133J17, full insert sequence.
FL= gb:AK072496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3900011/11kinase interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38960Os.52995.1.S1_at11/115+22770675..22772303expressed protein
LOC_Os05g38969NANA5+22775014..22775695NA
LOC_Os05g38980Os.53380.1.S1_at11/115+22776978..22781871respiratory burst oxidase protein F, putative, expressed
LOC_Os05g38990Os.55717.1.S1_at11/115+22791057..22792632CCT motif family protein, expressed
LOC_Os05g39000Os.53410.1.S1_at11/115+22795522..22798595kinase interacting protein 1, putative, expressed
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53410.1.S1_at--911--2491Chr05:22796052..22796076 (25 bp)
AACAGGTTCTCATCACTCTGTGGCA
LOC_Os05g39000
Os.53410.1.S1_at--155--1371Chr05:22795900..22795924 (25 bp)
AGAGCTAGAAGCTGGGCTGGACCAT
LOC_Os05g39000
Os.53410.1.S1_at--543--4131Chr05:22795786..22795810 (25 bp)
GCAAAACTTCCGTAACCTGTCAACG
LOC_Os05g39000
Os.53410.1.S1_at--497--7071Chr05:22795768..22795792 (25 bp)
GTCAACGAAAGCTGGAGTTCCCCTT
LOC_Os05g39000
Os.53410.1.S1_at--962--10011Chr05:22795744..22795768 (25 bp)
TAGAACTTTCCTGTTCGGCACGAAG
LOC_Os05g39000
Os.53410.1.S1_at--936--5551Chr05:22795714..22795738 (25 bp)
GAAACCATCACTCTTTTCATGCATG
LOC_Os05g39000
Os.53410.1.S1_at--215--7711Chr05:22795682..22795706 (25 bp)
GGGTGCATAAGCATCACAGTGGCTC
LOC_Os05g39000
Os.53410.1.S1_at--673--3311Chr05:22795668..22795692 (25 bp)
CACAGTGGCTCAAGGGCTGGTCGTA
LOC_Os05g39000
Os.53410.1.S1_at--797--7951Chr05:22795630..22795654 (25 bp)
GGATCATCAACTTTCTTTTGTCAAT
LOC_Os05g39000
Os.53410.1.S1_at--484--1371Chr05:22795594..22795618 (25 bp)
AGAGCTCAGTGTACCTGTCAATTGA
LOC_Os05g39000
Os.53410.1.S1_at--1063--5431Chr05:22795529..22795553 (25 bp)
GAACCCTGCATCTCTTAATATAAAT
LOC_Os05g39000
Target Sequence 
AACAGGTTCTCATCACTCTGTGGCATACAAGAGGAGATATCAAAGATCGCAACTCTGGATAAAAGCGATGAAGTTCACTT
CACCCCTTTCCAAGCTGCAAAACTCCAAGGAGAGGTGCTTAATATGAAACAAGAGAATAACAAAGTCGCTAAAGAGCTAG
AAGCTGGGCTGGACCATGTAAGAGGTCTCCAAGTGGAGGTTGGCAGGGTGCTCTTGAAGCTCCGAGAAAATCTTGAATTA
TCTATAGCAAGAAGCAACCGAGCTCAGCAAAACTTCCGTAACCTGTCAACGAAAGCTGGAGTTCCCCTTAGAACTTTCCT
GTTCGGCACGAAGCCAAAGAAACCATCACTCTTTTCATGCATGGGTCCTGGGGTGCATAAGCATCACAGTGGCTCAAGGG
CTGGTCGTAGATGAGAATGGTTGGATCATCAACTTTCTTTTGTCAATTAATACAGAACAGAGCTCAGTGTACCTGTCAAT
TGATTTGTGGTATATGCAGTTTCTCATAGACCTTAAATGTAAAGAACCCTGCATCTCTTAATATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis