Browse Element(s) Details


Os.53432.1.S1_at

Description gb:AK072587.1
DB_XREF= gi:32982610
TID=Os.53432.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132E02, full insert sequence.
FL= gb:AK072587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0722010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07180NANA5+3763531..3769608hypothetical protein
LOC_Os05g07190NANA5+3770711..3775063retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g07200OsAffx.4268.1.S1_at10/115+3776254..3780393hypothetical protein
LOC_Os05g07200OsAffx.9524.1.S1_at3/115+3776254..3780393hypothetical protein
LOC_Os05g07200Os.37083.1.S1_at1/115+3776254..3780393hypothetical protein
LOC_Os05g07210Os.50277.1.S1_at11/115+3785993..3788799ZIP zinc/iron transport family protein, expressed
LOC_Os05g07220Os.53432.1.S1_at10/115+3791325..3797787Kelch motif family protein, expressed
LOC_Os05g07230OsAffx.26768.1.S1_at11/115+3802870..3803738hypothetical protein
LOC_Os05g07240OsAffx.14578.1.S1_x_at11/115+3811047..3811559expressed protein
LOC_Os05g07240Os.8693.1.S1_x_at1/115+3811047..3811559expressed protein
LOC_Os05g07250OsAffx.27250.3.S1_x_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_s_at11/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_x_at5/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.1.S1_at3/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.22147.1.S1_x_at2/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07250OsAffx.27250.4.S1_x_at1/115+3815141..3817349Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os05g07260Os.24661.1.S1_at11/115+3817701..3821188phosphatidylinositolglycan, putative, expressed
LOC_Os05g07270OsAffx.14579.1.S1_at10/115+3821793..3823499LOB domain protein 13, putative
LOC_Os05g07270OsAffx.28759.1.S1_x_at1/115+3821793..3823499LOB domain protein 13, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53432.1.S1_at--852--9531NONE
TCTAGCGTAGAGATCTTTGGCCCAC
NONE
Os.53432.1.S1_at--830--7711Chr05:3791893..3791917 (25 bp)
GGGTGATCCCATGAACTTTCCAAGA
LOC_Os05g07220
Os.53432.1.S1_at--83--6771Chr05:3791853..3791877 (25 bp)
GTTACCCTGGGTGACAATGTGTTTG
LOC_Os05g07220
Os.53432.1.S1_at--558--10811Chr05:3791831..3791855 (25 bp)
TTGTCATTGGCGGTCTACAGTCGAG
LOC_Os05g07220
Os.53432.1.S1_at--34--2291Chr05:3791682..3791706 (25 bp)
AAATGCGGCTGGTCAGTTCCTGGTT
LOC_Os05g07220
Os.53432.1.S1_at--241--9491Chr05:3791628..3791652 (25 bp)
TCTGCTGCTGTCGTTTAAGCGTGTT
LOC_Os05g07220
Os.53432.1.S1_at--673--1451Chr05:3791603..3791627 (25 bp)
AGAAGTACAGTGCTTGTCCCATCTC
LOC_Os05g07220
Os.53432.1.S1_at--271--7251Chr05:3791588..3791612 (25 bp)
GTCCCATCTCATCAGTTCTAACAAT
LOC_Os05g07220
Os.53432.1.S1_at--595--2411Chr05:3791509..3791533 (25 bp)
AAAAATTGCCCTTCTGCTGTGATTC
LOC_Os05g07220
Os.53432.1.S1_at--88--7411Chr05:3791491..3791515 (25 bp)
GTGATTCCAGTTTCGTGTACAGCGA
LOC_Os05g07220
Os.53432.1.S1_at--1024--3691Chr05:3791445..3791469 (25 bp)
CTAGGTAGTCAGTCACTTGTCCAAA
LOC_Os05g07220
Target Sequence 
TCTAGCGTAGAGATCTTTGGCCCACGTCGCAACTCCTGGAGGGTGGGTGATCCCATGAACTTTCCAAGAGGATACGCCTC
TACAGTTACCCTGGGTGACAATGTGTTTGTCATTGGCGGTCTACAGTCGAGTGAAAAGTTTATGGATTCTGTGGAAGTTT
ACAATGTGAAATGCGGCTGGTCAGTTCCTGGTTTCAGCTCGATTGGGGTGAGGTGCTTCGCGTCTGCTGCTGTCGTTTAA
GCGTGTTAGAAGTACAGTGCTTGTCCCATCTCATCAGTTCTAACAATTTTGTGCCATGCAAGGAAACAAACCCTAATCGT
GTTTTCCGACATTTTGAGGGTAAAAATTGCCCTTCTGCTGTGATTCCAGTTTCGTGTACAGCGAAAGTCAGCATAGTATG
GAGCTCTAGGTAGTCAGTCACTTGTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis