Browse Element(s) Details


Os.53458.1.S1_at

Description gb:AK072740.1
DB_XREF= gi:32982763
TID=Os.53458.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134H21, full insert sequence.
FL= gb:AK072740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1756011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17520OsAffx.17757.1.S1_at11/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.22564.2.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.17424.1.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17530Os.57392.1.S1_at2/119+10731282..10732352F-box domain containing protein
LOC_Os09g17540Os.54347.1.S1_at11/119+10732801..10734332F-box domain containing protein, expressed
LOC_Os09g17550OsAffx.29895.1.S1_at11/119+10737215..10737792hypothetical protein
LOC_Os09g17560Os.53458.1.S1_at11/119+10739342..10740907O-methyltransferase family protein, expressed
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53458.1.S1_at--444--7911Chr09:10739832..10739856 (25 bp)
GGATCAAACGAAACTGTTCCCAAGG
LOC_Os09g17560
Os.53458.1.S1_at--908--3971Chr09:10739693..10739717 (25 bp)
CGGTGCTGGGTGTTCGATCAATCAT
LOC_Os09g17560
Os.53458.1.S1_at--845--10451Chr09:10739662..10739686 (25 bp)
TTACCCTTGATGCTCCTAGAGGTGT
LOC_Os09g17560
Os.53458.1.S1_at--47--751Chr09:10739635..10739659 (25 bp)
ATGTGCATCTCACCATGTGACCTAC
LOC_Os09g17560
Os.53458.1.S1_at--842--10411Chr09:10739530..10739554 (25 bp)
TTATTCAGGAGTCAGTAGTGCGCAC
LOC_Os09g17560
Os.53458.1.S1_at--728--1191Chr09:10739517..10739541 (25 bp)
AGTAGTGCGCACGATCACACCAAGG
LOC_Os09g17560
Os.53458.1.S1_at--422--2951Chr09:10739496..10739520 (25 bp)
AAGGCCACTGTTCTCATTTTCCTAT
LOC_Os09g17560
Os.53458.1.S1_at--141--10131Chr09:10739470..10739494 (25 bp)
TATGAGCTACAATACGCACGCCGTT
LOC_Os09g17560
Os.53458.1.S1_at--1127--1931Chr09:10739438..10739462 (25 bp)
ACGGCTTATGCGCATCGTGGCTCAA
LOC_Os09g17560
Os.53458.1.S1_at--845--7531Chr09:10739422..10739446 (25 bp)
GTGGCTCAAGTCTCGGGCATGTTGT
LOC_Os09g17560
Os.53458.1.S1_at--177--8251Chr09:10739407..10739431 (25 bp)
GGCATGTTGTTAGCCCAAAATTTCC
LOC_Os09g17560
Target Sequence 
GGATCAAACGAAACTGTTCCCAAGGAGATGCAACTTCTCTTTGATGTTTTCATGATGTACACCGATGGCATCGAGCGGGA
GGAGCATGAATGGAAGAAGATTTTCTTGGAGGCTGGATTTAGTGACTACAAAATCATACCGGTGCTGGGTGTTCGATCAA
TCATTGAGGTTTACCCTTGATGCTCCTAGAGGTGTACATGTGCATCTCACCATGTGACCTACTCTAGTTCAAATAATTGA
ACAAAATGCATAATATGTTACTTAAAAACCGATCGGTTTGATGTTAGTATTTTGATTTCCTTTTATTCAGGAGTCAGTAG
TGCGCACGATCACACCAAGGCCACTGTTCTCATTTTCCTATGTATGAGCTACAATACGCACGCCGTTGGATGGCACGGCT
TATGCGCATCGTGGCTCAAGTCTCGGGCATGTTGTTAGCCCAAAATTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis